Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq20 109 5e-19 >seq20 Length=498608 Score = 109 bits (120), Expect = 5e-19 Identities = 114/150 (76%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 ||||| ||| || || ||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 299133 CAATTATTTACCAGCAAATATCAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTG 299192 Query 45251 AATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTT 45310 |||||| ||| | |||| |||||||| | || || || | ||| | ||||| Sbjct 299193 AATTTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACCTCCAAAGTGATGGTTTT 299252 Query 45311 GCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || |||||||||||||| Sbjct 299253 TCCAGTAAGGGTCTTAACAAAAATTTGCAT 299282 Score = 105 bits (116), Expect = 6e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| |||||||| || || ||||| |||||||||||||||||||| ||| | Sbjct 325157 ATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCTTTTACAT 325216 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 |||| |||||||| | || ||||| | ||||| ||||| || || || || || | Sbjct 325217 TCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTAATGGTTTTTCCAGTAAGGGTCTTAA 325276 Query 45328 CAAAAATTTGCAT 45340 ||||||||||||| Sbjct 325277 CAAAAATTTGCAT 325289 Score = 102 bits (112), Expect = 7e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || |||||||||||||| |||||||||||||| || | Sbjct 342781 ATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTCTTCACAT 342840 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | ||| ||||| | || | ||||| || |||| ||||| | Sbjct 342841 TTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAGGTTTTCA 342900 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||||||||| ||| || Sbjct 342901 CAAAAATTTGCATACCGCCAC 342921 Score = 102 bits (112), Expect = 7e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||||||||||||||| || |||||||||||||| |||||||||||||| || | Sbjct 343355 ATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTCTTCACAT 343414 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | ||| ||||| | || | ||||| || |||| ||||| | Sbjct 343415 TTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAATGTTTTCA 343474 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||||||||| ||| || Sbjct 343475 CAAAAATTTGCATACCGCCAC 343495 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||| || |||||||| || || ||||| |||||||||||||||||||| ||| | Sbjct 298865 ATATTAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTACCTTTCACAT 298924 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 |||| |||||||| | || ||||| | ||| | ||||| || || || ||||| | Sbjct 298925 TCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTTCCAGTAAGCGTTTTAA 298984 Query 45328 CAAAAATTTGCAT 45340 ||||||||||||| Sbjct 298985 CAAAAATTTGCAT 298997 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| |||||||| ||||| ||||| || ||||||||||||||||| ||| | Sbjct 325440 ATATCAAACGTTGCTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTACTTTTCACAT 325499 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 |||| || || || | |||||||| | ||||| ||||| || || || || || | Sbjct 325500 TCTCTATTGTATCTGACGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTAAGTGTCTTAA 325559 Query 45328 CAAAAATTTGCAT 45340 ||||||||||||| Sbjct 325560 CAAAAATTTGCAT 325572 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| |||||||| || || ||||| || ||||||||||||||||| ||| | Sbjct 298583 ATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTACCTTTCACAT 298642 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 |||| |||||||| | || ||||| | ||| | ||||| || || || || || | Sbjct 298643 TCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTGAGGGTCTTAA 298702 Query 45328 CAAAAATTTGCAT 45340 ||||||||||||| Sbjct 298703 CAAAAATTTGCAT 298715 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 |||| || |||||||| ||||| ||||| |||||||||||||||||||| ||| | Sbjct 326289 ATATTAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTGCTTTTTACAT 326348 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 |||| || || || | |||||||| | ||| | ||||| || || || || || | Sbjct 326349 TCTCTATTGTATCTGACGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTAAGCGTCTTAA 326408 Query 45328 CAAAAATTTGCAT 45340 ||||||||||||| Sbjct 326409 CAAAAATTTGCAT 326421 Score = 96.9 bits (106), Expect = 3e-15 Identities = 106/141 (75%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| |||||||| || |||||||||||||| |||||||||||||| || | Sbjct 343068 ATATCAAGCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTACTCTTCACAT 343127 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 ||| | || || || | ||| ||||| | || | ||||| || |||| ||||| | Sbjct 343128 TTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTTAAGGTTTTCA 343187 Query 45328 CAAAAATTTGCATCGCGCGAC 45348 ||||||||||||| ||| || Sbjct 343188 CAAAAATTTGCATACCGCCAC 343208 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 45208 ATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCG 45267 ||||||| |||||||| || || ||||| || |||||| |||||||||| ||| | Sbjct 324875 ATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTACCTTGAATTTTACCTTTCACAT 324934 Query 45268 CTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTA 45327 |||| |||||||| | || ||||| | ||| | ||||| || || || || || | Sbjct 324935 TCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTGAGGGTCTTAA 324994 Query 45328 CAAAAATTTGCAT 45340 ||||||||||||| Sbjct 324995 CAAAAATTTGCAT 325007 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || ||||| | || |||| |||||| || || ||||||||||| ||||| |||||||| Sbjct 343776 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 343835 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||| | ||| | |||||| || | || ||||| || || | ||||| || || Sbjct 343836 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 343895 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||| || ||||| || ||||| Sbjct 343896 AGAGTCTTCACAAATATCTGCAT 343918 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 45210 ATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT 45269 ||||| |||||||| || || ||||| || |||||||| || ||||| ||| | Sbjct 325727 ATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCTTTTACATTC 325786 Query 45270 TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACA 45329 |||| || || || | |||||||| | ||||| ||||| || || || || || ||| Sbjct 325787 TCTATTGTATCTGACGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTAAGTGTCTTAACA 325846 Query 45330 AAAATTTGCAT 45340 ||||||||||| Sbjct 325847 AAAATTTGCAT 325857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451965943636240