Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq71 174 2e-38 seq20 87.8 2e-12 >seq71 Length=204746 Score = 174 bits (192), Expect = 2e-38 Identities = 264/372 (71%), Gaps = 8/372 (2%) Strand=Plus/Minus Query 132914 AGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTT 132973 || ||||||| | || || || ||||||||||| ||||| || ||||| ||||| || | Sbjct 134586 AGACCTCGTCACGAGAGATCAGCTCGTTGCTGAAGGTCAAACCTGGCATCAGGCCTCGCT 134527 Query 132974 TTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGA 133033 |||| | ||| || || | ||||| |||||||||||||| | ||| || || || |||| Sbjct 134526 TTTTCAACCAGAAAATTGACGCGAAGCTGCCCGAAAAGAAAATGCCTTCAACAGCTGCGA 134467 Query 133034 AAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATT 133093 | || |||| || ||| ||||| | || | ||||||| |||| ||||| | Sbjct 134466 ACGCGACCAAACGTTCGGAGAACGGTGATTGGCGGTCACCGATCCAACGCAAAGCCCAGT 134407 Query 133094 CGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTT 133153 | || |||| || || ||||| || |||||||| ||||| |||||| | | | || Sbjct 134406 CTGCTTTTTTCTTCACACACGGAATGGTTTCGATTGCGTTGAACAAA--AATTCACGCTC 134349 Query 133154 CCGAGGA--ACGCACGTAGGTGTCGATGA--GGGTCGAATACATTTCCGAGTGTACGTTC 133209 | ||| ||| | ||||||||| || | || | ||||| || || || || || Sbjct 134348 CACCGGATCACGGATGTAGGTGTCAATCAACAGGCTG--TACATCTCGGAATGGACATTT 134291 Query 133210 TCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCG 133269 || ||||| ||||| ||||| || ||| | || || ||| ||| || | |||||||| Sbjct 134290 TCTATGGCAATTTGGAAGCCATAGAAGAAACGTGCTTCGGTCACTTGAATTTCTTGAGAA 134231 Query 133270 AAACGCTCGACC 133281 || || || ||| Sbjct 134230 AATCGTTCCACC 134219 >seq20 Length=498608 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| ||||| || ||||| ||||| || |||||||| || | || || || || Sbjct 300540 AAAATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCC 300481 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | ||| | | ||| | |||| ||||| | || |||||||||||||| |||| Sbjct 300480 TCAGACTCCATTGAAAATGTGAAAGGCAAAATTCAGGATAAAGAGGGAATTCCACCCGAT 300421 Query 38361 CAACAGCGGCTCATTT 38376 ||||| |||||||||| Sbjct 300420 CAACAACGGCTCATTT 300405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500131573256960