Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq4 154 6e-32 seq150 123 1e-22 seq20 111 6e-19 seq3603 98.7 4e-15 seq2999 93.3 2e-13 seq155 87.8 7e-12 >seq4 Length=942137 Score = 154 bits (170), Expect = 6e-32 Identities = 451/687 (66%), Gaps = 11/687 (2%) Strand=Plus/Plus Query 450914 GCAATTGGAATTGATCTTGGAACCACCTTTTCATGTGTAGGTGTTTACCAAAATGGAAAT 450973 || |||||||||||| | || || |||| ||||| || || | ||| |||| || Sbjct 535332 GCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 535391 Query 450974 GTAGAAATTATAGCAAATGACCAAGGATCACGAACTACTCCTTCATGGGTAAGTTTTACG 451033 || |||||||| ||||| || ||||| || || || || | || ||| || Sbjct 535392 GTTGAAATTATTGCAAACGATCAAGGGAATCGCACCACGCCAAGTTATGTTGCTTTCACC 535451 Query 451034 GATTCAGAAAGACTTTTAGGGCAAGCTGCTAA--ATCAATGGTAAATTCAAATGCCAAAA 451091 ||| | ||| |||| | || | || || || |||| ||| | ||| | | | Sbjct 535452 GATACCGAACGACTGATTGGCGATGCGGCGAAGAATCA--GGTTGCGTTGAATCCTCATA 535509 Query 451092 ACACAGTATATGATGCTAAACGTTTAATTGGCCGTATGTATGATGATGATACTGTACAAA 451151 | ||||| | |||||| || || | || || ||| |||||||| | | |||| || Sbjct 535510 ATACAGTTTTTGATGCGAAGCGACTTATCGGTCGTCGATATGATGACGCTGCTGTGCAGT 535569 Query 451152 AAGAGAAAAAATTCTTTTCTTATGATGTAGTAAATCAAA-AAGGAAAGCCCTATATTCAA 451210 || | ||| | | | | | || | ||| | || |||| || | |||||| Sbjct 535570 CTGACATGAAACATTGGCCGTTTAAAGTTATCAATGATGGAACGAAA-CCTAAAATTCAA 535628 Query 451211 GTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTT 451270 || | || || || || || || | ||| | || |||||||| ||||||| || Sbjct 535629 GTCGAATACAAGGGCGAGACGAAGTCATTTACACCGGAAGAAATCAGCGCTATGGTG-TT 535687 Query 451271 ACTAAA-ATGAAAGAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAAT 451329 | | || ||||| ||||| || ||| ||| | || | |||| || || ||||| Sbjct 535688 AGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGACGCCGTAAT 535747 Query 451330 TACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATAT 451389 ||||||||| || ||||| || ||| | || || || || || ||||| || ||| || Sbjct 535748 TACTGTTCCAGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGAT 535807 Query 451390 TGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCTAGCATATGG 451449 | ||||||| || ||| | || || || || ||||| ||||| ||||| | || ||||| Sbjct 535808 TTCTGGTTTGAACGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTATGG 535867 Query 451450 ACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTTTGGTGGAGG 451509 ||| | | ||| | | ||| |||| || | ||||||| ||||||| || Sbjct 535868 ACTTG---ATAGAAAGGGTGGTGGCGAACGAAATGTTCTGATATTTGACCTTGGTGGTGG 535924 Query 451510 AACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAAGGCAACCAA 451569 || |||| ||| | | |||| || ||||| | |||||||| ||| | ||| Sbjct 535925 TACATTTGATGTGTCTATTTTGACAATCGAGGATGGTATCTTTGAAGTCAAGTCTACCGC 535984 Query 451570 TGGTGATACTCATCTAGGAGGTGAAGA 451596 |||||| ||||| | || ||||| || Sbjct 535985 TGGTGACACTCACTTGGGTGGTGAGGA 536011 >seq150 Length=99316 Score = 123 bits (136), Expect = 1e-22 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 451223 GGTGAAACTAAAACTTTTGCTCCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAA 451282 ||||||| ||| || |||| |||||||||||| | |||||| | ||||||||| Sbjct 48008 GGTGAAAAGAAATTGTTCACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAA 48067 Query 451283 GAAACAGCAGAACAATATATTGGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCT 451342 |||| || ||| ||| | || ||| | |||| || | || ||||| ||| Sbjct 48068 GAAATTGCCGAAGCTTATTTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCTGCT 48127 Query 451343 TATTTCAATGATGCACAACGGCAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAAT 451402 |||||||| ||||||||||| ||||| || |||||||| || ||||||||| | ||| Sbjct 48128 TATTTCAACGATGCACAACGTCAAGCTACCAAAGATGCGGGCACCATTGCTGGTCTTAAT 48187 Query 451403 GTTCTTCGAATTATTAATGAACC 451425 || ||||||| || |||||||| Sbjct 48188 GTAGTTCGAATCATCAATGAACC 48210 >seq20 Length=498608 Score = 111 bits (122), Expect = 6e-19 Identities = 112/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 391047 ATAATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCA 391106 || ||| | || || || || || || ||||| |||||||| || || || |||||| || Sbjct 343921 ATTATGCAGATATTTGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCA 343862 Query 391107 TCTGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGAT 391166 || || | ||| ||| | ||||| |||||||| ||||||||||| |||||||||||| Sbjct 343861 TCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGAT 343802 Query 391167 CAACAACGTTTAATTTTCTCAGGGAA 391192 || ||| | ||||| || |||| || Sbjct 343801 CAGCAAAGATTAATCTTTGCAGGTAA 343776 Score = 102 bits (112), Expect = 3e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| |||||||| || ||||| ||||| || ||| | || || ||| |||| Sbjct 298997 ATGCAAATTTTTGTTAAAACGCTTACTGGAAAAACCATCACTTTGGAAGTGGAACCATCC 298938 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || || | | ||| |||||||||||||| ||||||||||| || ||||| Sbjct 298937 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 298878 Query 391170 CAACGTTTAATTTT 391183 ||||||||||| || Sbjct 298877 CAACGTTTAATATT 298864 Score = 100 bits (110), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || ||||| ||||| |||||| | || || ||| |||| Sbjct 325290 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACCATTACTTTGGAAGTGGAACCATC 325231 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | || || | | ||| |||||||||||||| ||||||||||| || ||||| Sbjct 325230 CGACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 325171 Query 391169 ACAACGTTTAATTTT 391183 |||||||| || || Sbjct 325170 GCAACGTTTGATATT 325156 Score = 100 bits (110), Expect = 1e-15 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || ||||| ||||| || ||| | || || ||| | || Sbjct 326422 AATGCAAATTTTTGTTAAGACGCTTACTGGAAAAACCATCACTTTGGAAGTCGAACCGTC 326363 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 |||| || || | | ||| |||||||||||||| ||||||||||| || ||||| Sbjct 326362 AGATACAATAGAGAATGTAAAAAGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCA 326303 Query 391169 ACAACGTTTAATTTT 391183 ||||||||||| || Sbjct 326302 GCAACGTTTAATATT 326288 Score = 98.7 bits (108), Expect = 4e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| ||||| ||||| ||||| ||||| |||||| | || || ||| | || Sbjct 325572 ATGCAAATTTTTGTTAAGACACTTACTGGGAAAACCATTACTTTGGAAGTCGAACCGTCA 325513 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || || | | ||| |||||||||||||| || |||||||| || ||||| Sbjct 325512 GATACAATAGAGAATGTGAAAAGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAG 325453 Query 391170 CAACGTTTAATTTT 391183 |||||||| || || Sbjct 325452 CAACGTTTGATATT 325439 Score = 98.7 bits (108), Expect = 4e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || |||||| | ||||| ||||| || || | || || || ||||| Sbjct 343487 ATGCAAATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 343428 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || |||||||||||||||||||| ||||| |||||||| Sbjct 343427 GATACGATTGAAAATGTGAAGAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 343368 Query 391170 CAACGTTTAATTTT 391183 ||||| || || || Sbjct 343367 CAACGATTGATATT 343354 Score = 96.9 bits (106), Expect = 1e-14 Identities = 110/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || ||||| ||||| || ||| | || || ||| |||| Sbjct 299283 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACCATCACTTTGGAGGTGGAACCATC 299224 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | || || | | ||| |||||||||||||| ||||||||||| || ||||| Sbjct 299223 CGACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCA 299164 Query 391169 ACAACGTTTAATTTTCTCAGGGAAACAA 391196 |||||||| || || | || ||| || Sbjct 299163 GCAACGTTTGATATTTGCTGGTAAATAA 299136 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | ||||| ||||| || || ||||| |||||||| ||| | || || ||| |||| Sbjct 298716 AATGCAAATTTTTGTTAAGACCCTCACTGGAAAAACTATCACTTTGGAAGTGGAACCATC 298657 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || | || || | | ||| |||||||||||||| || |||||||| || ||||| Sbjct 298656 CGACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 298597 Query 391169 ACAACGTTTAATTTT 391183 |||||||| || || Sbjct 298596 GCAACGTTTGATATT 298582 Score = 95.1 bits (104), Expect = 5e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 391049 AATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATC 391108 |||| | || || || ||||| || ||||| ||||| |||||||| || || ||| | || Sbjct 300538 AATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTC 300479 Query 391109 TGATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCA 391168 || ||||||| | | ||| |||||||| ||||| || |||||||| || ||||| Sbjct 300478 AGACTCCATTGAAAATGTGAAAGGCAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 300419 Query 391169 ACAACGTTTAATTTT 391183 |||||| | ||||| Sbjct 300418 ACAACGGCTCATTTT 300404 Score = 93.3 bits (102), Expect = 2e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| | ||||| ||||| || || | || || || ||||| Sbjct 342913 ATGCAAATTTTTGTGAAAACCTTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 342854 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || |||||||||||||||||||| ||||| |||||||| Sbjct 342853 GATACGATTGAAAATGTGAAGAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 342794 Query 391170 CAACGTTTAATTTT 391183 ||||| || || || Sbjct 342793 CAACGATTGATATT 342780 Score = 93.3 bits (102), Expect = 2e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||| || ||||| | ||||| ||||| || || | || || || ||||| Sbjct 343200 ATGCAAATTTTTGTGAAAACCTTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 343141 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| |||||| | | || |||||||||||||||||||| ||||| |||||||| Sbjct 343140 GATACGATTGAAAATGTGAAGAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 343081 Query 391170 CAACGTTTAATTTT 391183 ||||| || || || Sbjct 343080 CAACGCTTGATATT 343067 Score = 89.7 bits (98), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||||||||| || ||||| ||||| || ||| | || || || |||| Sbjct 299565 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAGCCATCC 299506 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | || ||| | | ||| ||||| || || || || |||||||| |||||||| Sbjct 299505 GACACTATAGAAAATGTAAAAGGCAAAATACAGGACAAAGAGGGAATTCCACCTGATCAG 299446 Query 391170 CAACGTTTAATTTT 391183 |||||||| || || Sbjct 299445 CAACGTTTGATATT 299432 >seq3603 Length=332 Score = 98.7 bits (108), Expect = 4e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||||||||| || ||||| ||||| || ||| | || || || |||| Sbjct 290 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAGCCATCC 231 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | ||| ||||| || ||||| || |||||||| || ||||| Sbjct 230 GATACTATAGAAAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 171 Query 391170 CAACGTTTAATTTT 391183 |||||||| ||||| Sbjct 170 CAACGTTTGATTTT 157 >seq2999 Length=368 Score = 93.3 bits (102), Expect = 2e-13 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | |||||||||||||| || ||||| ||||| || ||| | || || || | || Sbjct 43 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAGCCGTCC 102 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 |||| || ||| | | ||| ||||| || ||||| || |||||||| || ||||| Sbjct 103 GATACTATAGAAAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 162 Query 391170 CAACGTTTAATTTT 391183 |||||||| ||||| Sbjct 163 CAACGTTTGATTTT 176 >seq155 Length=96529 Score = 87.8 bits (96), Expect = 7e-12 Identities = 127/177 (72%), Gaps = 8/177 (5%) Strand=Plus/Minus Query 127383 ATATTTTTGTCTTTTATCTGAATCACTTAAAATAGAATATGCTTCCGAAATTTCTTTAAA 127442 |||||| | |||||| | |||||| | || | |||||||| | |||||||||||| Sbjct 16303 ATATTTCTTTCTTTTTA--GCATCACTCAGAACATCGTATGCTTCTGCAATTTCTTTAAA 16246 Query 127443 TTTTTGTTCAGCTTCTTGTTTGTTATTTTGATTCTTATCAGGATGATGTTTAACAGCTAA 127502 ||| ||| || || | | |||| ||||| |||||||||| ||| | || | Sbjct 16245 TTTGCTTTCTGCATCAGGACT-----TTTG-TTCTTGTCAGGATGATATTTCAACGCCAT 16192 Query 127503 TTTACGGTAAGCTTTTTTAATTTCTGCTTCAGTAGCATTTTTGTTAATTCCTAGTAT 127559 || || ||||||||||||||||| |||| || ||| || || |||| || | ||| Sbjct 16191 CTTCCGATAAGCTTTTTTAATTTCATCTTCCGTGGCACTTCTGCTAATACCCAATAT 16135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975551480196152