Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq4 309 2e-78 seq150 168 5e-36 seq113 104 2e-16 seq155 87.8 1e-11 >seq4 Length=942137 Score = 309 bits (342), Expect = 2e-78 Identities = 489/701 (70%), Gaps = 0/701 (0%) Strand=Plus/Minus Query 518013 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 518072 |||| | ||||| || || || ||||| ||||| | ||| | || | |||| | | Sbjct 536031 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTAGACTTGA 535972 Query 518073 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATAT 518132 ||| || | ||||| || | | ||||| || |||||| || |||||||| | | Sbjct 535971 CTTCAAAGATACCATCCTCGATTGTCAAAATAGACACATCAAATGTACCACCACCAAGGT 535912 Query 518133 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 518192 |||| || || ||||| ||| | ||| ||||||| ||||| |||| |||| Sbjct 535911 CAAATATCAGAACATTTCGTTCGCCACCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 535852 Query 518193 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 518252 | || |||||||| || || || | |||||| || | ||||| ||| |||| || |||| Sbjct 535851 CCGCTGTTGGTTCGTTGATGATACGCAAAACGTTCAAACCAGAAATCGTTCCAGCGTCTT 535792 Query 518253 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTA 518312 | || || || | || ||||||||||||||||| ||||||||||| ||||| || | | Sbjct 535791 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCTGGAACAGTAATTACGGCGTCCTTAA 535732 Query 518313 CTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 518372 | ||| || | |||||| || |||| ||||| || ||| | ||| | | Sbjct 535731 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCGCTGA 535672 Query 518373 TTTGTTCTGGGGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 518432 ||| ||| || | | || ||| | || | ||| |||| || | ||||| Sbjct 535671 TTTCTTCCGGTGTAAATGACTTCGTCTCGCCCTTGTATTCGACTTGAATTTTAGGTTTCG 535612 Query 518433 TACCAACATTAATAACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCAT 518492 | ||| |||| ||||||||||| ||||| | |||||| || || || ||| ||||| Sbjct 535611 TTCCATCATTGATAACTTTAAACGGCCAATGTTTCATGTCAGACTGCACAGCAGCGTCAT 535552 Query 518493 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTGCAG 518552 | | | ||| || | ||| || |||||||||| ||||| ||||| | ||| Sbjct 535551 CATATCGACGACCGATAAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 535492 Query 518553 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 518612 | |||| || || ||||| |||||||| |||| || || || || | |||||| || Sbjct 535491 CCTGATTCTTCGCCGCATCGCCAATCAGTCGTTCGGTATCGGTGAAAGCAACATAACTTG 535432 Query 518613 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 518672 | || |||||||| |||||||| || |||||||||||||||||||||| || | || | Sbjct 535431 GCGTGGTGCGATTCCCTTGATCGTTTGCAATAATTTCAACTTTACCATGCTGGAACACGC 535372 Query 518673 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 518713 | |||||||| | || || || |||||||| ||||||||| Sbjct 535371 CAACACAACTGTAGGTAGTACCCAAATCAATTCCAATAGCA 535331 Score = 118 bits (130), Expect = 8e-21 Identities = 197/282 (70%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 517604 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 517663 ||| | || ||||| || |||||||| |||||||| | ||| || |||| ||| ||| Sbjct 536497 ATACCTGCTCCATACGCGACAGCTTCGTCAGGATTGATGCTTTTGTTAAGTTCTTTCCCA 536438 Query 517664 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 517722 |||||||||| ||| || || || | || |||||||| |||| ||||| || || || Sbjct 536437 TTGAAAAAATCTTGCAACAA-TTTTTGAACTTTAGGAATGCGAGTAGATCCACCCACCAA 536379 Query 517723 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 517782 |||| |||||| | | || ||| || | ||| | ||| | | ||||||| || || Sbjct 536378 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGG 536319 Query 517783 TTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 517842 ||| | | | | |||||||| | | |||||||| || ||||| |||| || Sbjct 536318 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAGTTCTTCAAAGCGAGCTCGCGTAATTGT 536259 Query 517843 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 517884 | | ||||||| |||||| | | | ||||| |||||| Sbjct 536258 GGTGTAGAAATCAATGCCTTCGTAGAGACTATCAATTTCAAT 536217 >seq150 Length=99316 Score = 168 bits (186), Expect = 5e-36 Identities = 350/513 (68%), Gaps = 20/513 (4%) Strand=Plus/Minus Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 |||||||| || |||| | ||||||||||||||||| | || |||||||| || ||| Sbjct 48210 GGTTCATTGATGATTCGAACTACATTAAGACCAGCAATGGTGCCCGCATCTTTGGTAGCT 48151 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTA 518320 || | ||||| |||||| ||||| |||||||| || | ||||||| | |||||||| Sbjct 48150 TGACGTTGTGCATCGTTGAAATAAGCAGGAACCGTGACGACGGCATTTTTCACTTCTTTG 48091 Query 518321 CCAATATAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 518380 || | |||||| || ||| ||||||||| |||| ||| | |||||||| ||| Sbjct 48090 CCCAAATAAGCTTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 48031 Query 518381 GG---GGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 518437 || | | ||| ||| |||| | | | || || | || || || | Sbjct 48030 GGAGTGAACAATTTCTT---TTCACCGCTAACAGTGAGTTGAACGTTCGGCTTGTT--CG 47976 Query 518438 ACATTAATA--ACTTTAAATGGCCAGTATTTCATATCTGATTGAACACTTTGGTCATTAA 518495 | || || ||| |||||||||| ||| ||| | ||||| ||| | ||| Sbjct 47975 ATTTTTCTAACACTGTAAATGGCCACATTTTACGATCCGCTTGAAGACTCTTGTCCGACC 47916 Query 518496 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAATTG-CAGCT 518554 | |||| ||||| | || || ||||| || | ||||| ||||| | | || | Sbjct 47915 ATTCTCGACCAACCATACGCTTAGCATCGAATACCGTATTCTCAGGATTGGTGGTCAAC- 47857 Query 518555 TGATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGAT 518611 |||| ||| || ||||| ||||||||| | | || | |||||| | ||||| || Sbjct 47856 TGATTTTTCGCGGCATCGCCAATCAGACGCTCACCTTCCGGTGTAAAAGCTACATACGAC 47797 Query 518612 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACA 518671 ||||| | ||||| || |||||||| |||||||||||||| |||||| | | || Sbjct 47796 GGAGTAATACGATTGCCCTGATCATTGGCAATAATTTCAACACGACCATTCTTGAAAACT 47737 Query 518672 CCTACACAACTAAAAGTTGTTCCTAAATCAATA 518704 || || ||||||| || || | | |||||| Sbjct 47736 CCAAC---ACTAAAAATTATT--TTATTCAATA 47709 >seq113 Length=135743 Score = 104 bits (114), Expect = 2e-16 Identities = 124/168 (74%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 841327 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 841386 ||| | |||||||| ||||||||||| ||| | ||| || | |||| | | |||||| Sbjct 59976 TATATTTGTGGTACAGATGAATATGGCACTGCCACAGAGACAAAAGCTATTGAAGAAGGT 60035 Query 841387 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 841446 || ||| | | | || |||||||| |||| ||| || || |||||||||| ||| Sbjct 60036 GTGACTCCTATTCAGCTCTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGG 60095 Query 841447 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACAG 841494 |||||||| |||||||| ||||||| | | | |||||| ||||| Sbjct 60096 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAGAACAG 60140 >seq155 Length=96529 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/181 (72%), Gaps = 15/181 (8%) Strand=Plus/Plus Query 327848 AGTGCCTCGGAAGAAGACATTAAAAAAGCTTATAGAAAACTGGCTATCAAATATCATCCT 327907 |||||| ||||||| || ||||||||||||||| | || |||| | |||||||||||| Sbjct 16153 AGTGCCACGGAAGATGAAATTAAAAAAGCTTATCGGAAGATGGCGTTGAAATATCATCCT 16212 Query 327908 GACAAAAATAAAGGAAATCCTGAAGCCG--AGGAAATGTTCAAGAAGATT----AATCAT 327961 ||||| || || || |||||| || | || |||| || ||||| ||| || ||| Sbjct 16213 GACAAGAACAA---AAGTCCTGATGCAGAAAGCAAAT-TTAAAGAA-ATTGCAGAAGCAT 16267 Query 327962 GCCAATAGTATTTTGTCTAATTCTGAAAAGAGAAGAGTTTATGATCAATATGGTGAAGAA 328021 | | | || || | || || |||||| | | | || ||| ||| |||||||||| Sbjct 16268 ACGA----TGTTCTGAGTGATGCTAAAAAGAAAGAAATATACGATAAATTTGGTGAAGAA 16323 Query 328022 G 328022 | Sbjct 16324 G 16324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780495183999364