Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq4 277 2e-69 seq150 129 7e-25 >seq4 Length=942137 Score = 277 bits (306), Expect = 2e-69 Identities = 518/755 (69%), Gaps = 12/755 (2%) Strand=Plus/Minus Query 7337 AACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCG 7396 ||||| || || || || ||||| || || || |||||||| | || || || ||| Sbjct 536137 AACGTGCGTTTCGCTCGTTCACAAGCTGTGCGCAAACGACGCAATGCGCGTGGATTAGAT 536078 Query 7397 GAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAA 7456 || || |||||||| | || ||||||||||| | ||| || | | | Sbjct 536077 GACATGTCTTTCTTGTTCTTTCGTTTAAACTCAGCCACGAAATGATTTACCATGCGATTG 536018 Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || ||||| | ||||||||||||||||| Sbjct 536017 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTAGACTTGACTTCAAAGATACCA 535958 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTAC- 7575 | || || | || | || |||||||| ||||||||||| |||||||| || || || Sbjct 535957 TCCTCGATTGTCAAAATAGACACATCAAATGTACCACCACCAAGGTCAAATATCAGAACA 535898 Query 7576 GTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 ||||| ||| | | || |||| || || || || || || ||||| |||||||| Sbjct 535897 TTTCGT-TCGCCACCACCCTTTCTATCAAGTCCATAAGCAATTGCAGCCGCTGTTGGTTC 535839 Query 7636 ATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCG 7695 || || ||||| | | ||||| |||| ||| ||| | || ||||| ||||| || || Sbjct 535838 GTTGATGATACGCAAAACGTTCAAACCAGAAATCGTTCCAGCGTCTTTGGTCGCCTGACG 535779 Query 7696 TTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAG 7755 || ||||||||||| || || || || || | || |||||| | || | || || | Sbjct 535778 CTGAGAATCGTTAAAATATGCTGGAACAGTAATTACGGCGTCCTTAACAGTTTTTCCCAA 535719 Query 7756 ATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT--CGATGAAATCTCTTCAGCC 7813 ||| | ||| || | || ||||| || | ||||| || || || ||||| | Sbjct 535718 ATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCGCTG--ATTTCTTCCGGT 535661 Query 7814 GCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCG 7873 | ||| ||||| || || || | || |||| ||| | ||||| || || | Sbjct 535660 GTAAATGACTTCGTCTCGCCCTTGTATTCGACTTGAATTTTAGGTTT---CGTTCCATCA 535604 Query 7874 GGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTT 7933 |||||| ||| ||| ||||| |||||| || || || ||| | | Sbjct 535603 TTGATAACTTTAAACGGCCAATGTTTCATGTCAGACTGCACAGCAGCGTCATCATATCGA 535544 Query 7934 CTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTC 7993 | |||||||| ||||| |||||||||||||| || | || |||| || || ||| Sbjct 535543 CGACCGATAAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAACCTGATTC 535484 Query 7994 TTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTC 8053 |||||||| || || || || ||||| || || || || || || || ||| || Sbjct 535483 TTCGCCGCATCGCCAATCAGTCGTTCGGTA---TCGGTGAAAGCAACATAACTTGGCGTG 535427 Query 8054 GTTCGATTCCCTTGGTCGTTCGCAATAATTTCTAC 8088 || ||||||||||| ||||| ||||||||||| || Sbjct 535426 GTGCGATTCCCTTGATCGTTTGCAATAATTTCAAC 535392 Score = 149 bits (164), Expect = 8e-31 Identities = 201/279 (72%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 7040 GCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAA 7099 || || || ||||| || || || || || || |||| || |||||||| || || ||| Sbjct 536491 GCTCCATACGCGACAGCTTCGTCAGGATTGATGCTTTTGTTAAGTTCTTTCCCATTGAAA 536432 Query 7100 TAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATT 7159 |||| |||| || ||||| ||| || || || || |||||||| |||||||| | | Sbjct 536431 AAATCTTGCAACAATTTTTGAACTTTAGGAATGCGAGTAGATCCACCCACCAAAACAACT 536372 Query 7160 TCAT---TCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCC 7216 |||| ||||| | ||| || | || | || ||||| | |||||| || |||||| Sbjct 536371 TCATGAATCACT---GCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGGTTCC 536315 Query 7217 ATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTA 7276 | | |||||||||||| | |||||| ||||| || || || ||||| | || Sbjct 536314 AAAGTAGAACGGAACAAGTCAGCATTCAGTTCTTCAAAGCGAGCTCGCGTAATTGTGGTG 536255 Query 7277 TAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATG 7315 |||||||||| ||| ||||| | ||||||||||||| Sbjct 536254 TAGAAATCAATGCCTTCGTAGAGACTATCAATTTCAATG 536216 >seq150 Length=99316 Score = 129 bits (142), Expect = 7e-25 Identities = 315/468 (67%), Gaps = 17/468 (4%) Strand=Plus/Minus Query 7631 GGTTCATTAATAATACGAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGC 7689 |||||||| || || |||| ||| || || |||||||| || |||||||||| || || Sbjct 48210 GGTTCATTGATGATTCGAACTACA-TTAAGACCAGCAATGGTGCCCGCATCTTTGGTAGC 48152 Query 7690 TTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTT 7749 ||| ||||| | |||||| || || || || ||||| ||||| || | | |||| || Sbjct 48151 TTGACGTTGTGCATCGTTGAAATAAGCAGGAACCGTGACGACGGCATTTTTCACTTCTTT 48092 Query 7750 ACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 || | ||| | ||| || || ||||||||||| | |||||||| |||||| ||||| Sbjct 48091 GCCCAAATAAGCTTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTC 48032 Query 7810 AGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGC 7869 | | ||| |||| |||||||| ||| | | || || | || || | || Sbjct 48031 GGGAGTGAACAATTTCTTTTCACCGCTAACAGTGAGTTGAACGTTCGGCTTGTTCGATTT 47972 Query 7870 ACCGGGGATAAC-CT-TATACGACCAATCTTTCATATCGTCTTGGA-CCTGTTGGTCCGA 7926 | |||| || || | | ||| ||| ||| |||| | || || |||||| Sbjct 47971 TTC-----TAACACTGTAAATGGCCACATTTTACGATCCGCTTGAAGACTCTT-GTCCGA 47918 Query 7927 AAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGT 7986 | | || || | | |||||| ||||| || || || || | || || ||| Sbjct 47917 CCATTCTCGACCAACCATACGCTTAGCATCGAATACCGTATTCTCAGGATTGGTGGTCAA 47858 Query 7987 TTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCC---GTAAACGCGACGTA 8043 || || ||||| || || || || ||||| || | |||| ||||| || || || Sbjct 47857 CTGATTTTTCGCGGCATCGCCAATCAGACGCTC---ACCTTCCGGTGTAAAAGCTACATA 47801 Query 8044 CGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCG 8091 ||| || || | ||||| || || || || ||||||||||| || || Sbjct 47800 CGACGGAGTAATACGATTGCCCTGATCATTGGCAATAATTTCAACACG 47753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635080449178960