Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq13 87.8 2e-12 seq68 84.2 3e-11 seq1 82.4 9e-11 >seq13 Length=631594 Score = 87.8 bits (96), Expect = 2e-12 Identities = 54/58 (93%), Gaps = 0/58 (0%) Strand=Plus/Minus Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 |||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| Sbjct 391594 ATAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCTAAGGTCGTGGGTTCGAGCCCC 391537 >seq68 Length=215320 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/183 (71%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 109413 ATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAGTTT 109472 ||| ||||| || ||||| || || |||||| |||| | |||||| || | ||||| Sbjct 30880 ATAGTACATCCCAGTTTTCAGTCCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAGTTT 30821 Query 109473 GGAAAGTGTCGGACTCTCCA---TAAACAAGTTCATCGACTGAGACTGATCGATGAATCG 109529 | | || || ||| || | || | |||| |||||| || || || ||||| Sbjct 30820 AGCATA-GTTGGGCTCGGCAATGTGAATA--TTCAACGACTGGGATTGGTCAATGAAAGC 30764 Query 109530 ACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTA 109589 ||| | || || |||||||| |||| || |||||| ||||||||| || |||||||| Sbjct 30763 ACCCCTTTCGGCGGCCATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTGTA 30704 Query 109590 CAA 109592 ||| Sbjct 30703 CAA 30701 >seq1 Length=1320437 Score = 82.4 bits (90), Expect = 9e-11 Identities = 53/58 (91%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC 136773 |||||||||| ||||||||||||||||| ||||||| |||||| ||||||||||||| Sbjct 101220 ATAGCTCAGTCGGTTAGAGCGTGGTGCTAATAACGCTAAGGTCGTGGGTTCGAGCCCC 101277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588927453653200