Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq20 107 4e-18 >seq20 Length=498608 Score = 107 bits (118), Expect = 4e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || ||||| || || || ||||| || |||||||||||||||||||| || Sbjct 300055 TACCAGCAAAAATAAGCCGCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTAC 300114 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || ||||||||||| || || || || |||||||| |||| ||| |||||||||| Sbjct 300115 TTTTTACGTTCTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 300174 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| Sbjct 300175 ACGTCTTCACAAATATCTGCAT 300196 Score = 107 bits (118), Expect = 4e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || || ||||| || || || ||||| || |||||||||||||||||||| || Sbjct 326909 TACCAGCAAAAATAAGCCGCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTAC 326968 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 || ||||||||||| || || || || |||||||| |||| ||| |||||||||| Sbjct 326969 TTTTTACGTTCTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 327028 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 | || || || || | ||||| Sbjct 327029 ACGTCTTCACAAATATCTGCAT 327050 Score = 91.5 bits (100), Expect = 3e-13 Identities = 109/148 (74%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 194994 CTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053 |||| |||| || || || | ||||| || ||||| ||||| |||||||| |||||||| Sbjct 325143 CTGCATACCGGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT 325202 Query 195054 TTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||| || || ||||| || ||||| || ||||||||| | |||| || ||||| Sbjct 325203 TTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTAATGGTTTTTCC 325262 Query 195114 TGTCAAAGTTTTTACGAACACTTGCATT 195141 || | || || || || | ||||||| Sbjct 325263 AGTAAGGGTCTTAACAAAAATTTGCATT 325290 Score = 89.7 bits (98), Expect = 1e-12 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 194994 CTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAAT 195053 |||| |||| || || || | ||||| || ||||| ||||| |||||||| |||||||| Sbjct 298851 CTGCATACCGGCAAATATTAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAAT 298910 Query 195054 TTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCC 195113 ||| || || ||||| || ||||| || ||||||||| | || | || ||||| Sbjct 298911 TTTACCTTTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTTCC 298970 Query 195114 TGTCAAAGTTTTTACGAACACTTGCAT 195140 || | ||||| || || | |||||| Sbjct 298971 AGTAAGCGTTTTAACAAAAATTTGCAT 298997 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 |||||||| ||||| | || ||| || || |||||||||||||| || || |||||||| Sbjct 343776 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 343835 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 || || || || |||||||| || ||| ||||| || || | || ||||| || Sbjct 343836 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 343895 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||| || || || | ||||| Sbjct 343896 AGAGTCTTCACAAATATCTGCAT 343918 Score = 84.2 bits (92), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || || || | |||||| || || || ||||||||||| || ||||||||||| Sbjct 342770 CTTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTT 342829 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || ||||| || || || || ||||| | || | || ||||| || Sbjct 342830 ACTCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGT 342889 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || | |||||| Sbjct 342890 TAAGGTTTTCACAAAAATTTGCAT 342913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109387864753598