Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq20 87.8 1e-12 >seq20 Length=498608 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || | ||| | |||||||||||||| ||||||||||||||||||||||| || || Sbjct 327052 CCACCACGCAAACGCAAAACCAAGTGAAGCGTGCTTTCTTTCTGAATGTTATAATCGGAC 327111 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATAT 34852 | | ||| |||| |||| |||||| || | |||||| Sbjct 327112 AAAGTACGTCCATCTTCCAACTGTTTGCCTGAAAATAT 327149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324607511023632