Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq68 123 3e-23 >seq68 Length=215320 Score = 123 bits (136), Expect = 3e-23 Identities = 185/267 (69%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 47486 TTTCCAATCCCAAAGATCTGATGGAACAACATTCCAAAAATCATATTGAAGAATTCCTTT 47545 || ||||||||| | ||| || || ||||||||| | |||||||||||||| || || Sbjct 30284 TTCCCAATCCCACAAATCCGAAGGCTGAACATTCCACATGTCATATTGAAGAATACCCTT 30225 Query 47546 ACTTATCGGAGAACCATTATATGTTTTATAAGGACCGTATAGTTTAGCGAGTTCACAACT 47605 ||| || || || | ||| || | || ||||| | |||| || | || || || Sbjct 30224 ACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAGCT 30165 Query 47606 TGCTTCCAATGCACTATAATATATTGTTTCAAATATTTTTATGTTTAGATTCCTTGCTTC 47665 ||| || ||| |||||| || |||||||| ||||| | || | || ||||| Sbjct 30164 ACTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAGTCTAGCTTC 30105 Query 47666 TGATGATTCAAAAGGATANNNNNNNNNNNNNAATGTATCTGCCAATCCTTGAACACCAAT 47725 | |||||||| ||||| || | ||| ||||| ||||| |||||||| Sbjct 30104 TTCGGATTCAAACGGATATCGCAACAAAATGAAAGCATCCGCCAACCCTTGCACACCAAT 30045 Query 47726 ACCAATTGGTCTATGAGTTTTATTAGA 47752 ||||||||||| |||| ||| ||||| Sbjct 30044 ACCAATTGGTCGATGACGTTTGTTAGA 30018 Score = 109 bits (120), Expect = 6e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 ||||| || ||||| ||||| || ||| || | || || |||||||| | ||||||| Sbjct 29453 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCGTGAGGACAC 29394 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 |||| ||||||||| | || || | | |||| || | ||| ||||||||||| Sbjct 29393 ATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAACAGATCGGGTATCCAAAGG 29334 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || ||| ||||| || | ||| |||||| |||| | ||| |||| |||||| Sbjct 29333 GCGTAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCTGTGTTCTTTTTCGCGTCAAGA 29274 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATA 48331 || || | ||| || || ||||| ||||| ||||| Sbjct 29273 AAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 29239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562062468182160