Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq4 260 1e-63 seq150 145 6e-29 seq155 113 4e-19 seq20 113 4e-19 seq66 102 7e-16 seq3603 98.7 8e-15 seq2999 95.1 1e-13 >seq4 Length=942137 Score = 260 bits (288), Expect = 1e-63 Identities = 421/600 (70%), Gaps = 13/600 (2%) Strand=Plus/Plus Query 549992 GCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAA 550051 ||||| || || ||||| || || || || ||||||||||| || | || |||||||| Sbjct 535332 GCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 535391 Query 550052 GTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACG 550111 |||||||||||||| || |||||||| || | || || ||| ||||||| ||||||| Sbjct 535392 GTTGAAATTATTGCAAACGATCAAGGGAATCGCACCACGCCAAGTTATGTTGCTTTCACC 535451 Query 550112 GAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAAT 550171 || || |||| | |||| ||||| || || |||| | | |||||| ||| Sbjct 535452 GATACCGAACGACTGATTGGCGATGCGGCGAAGAATCAGGTTGCGTTGAATCCTCATAAT 535511 Query 550172 ACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCA 550231 || |||||||||| || || | || || | | | | |||| | |||| ||| | Sbjct 535512 ACAGTTTTTGATGCGAAGCGACTTATCGGTCGTCGATATGATGACGCTGCTGTGCAGTCT 535571 Query 550232 GATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAA---AACCTTATATTGAA 550288 || ||||| |||||||| || || || | |||| | |||| ||||| | ||| || Sbjct 535572 GACATGAAACATTGGCCGTTTAAAGTTATCAATGAT---GGAACGAAACCTAAAATTCAA 535628 Query 550289 G-CTACT-CATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTT 550346 | | | | || | || | || |||| |||| ||| |||| ||||||| | Sbjct 535629 GTCGAATACAAGGGCGAGACG--AAGTCATTTACACCGGAAGAAATCAGCGCTATGGTGT 535686 Query 550347 TAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAA 550406 || |||| ||||| |||| ||| |||| | | || || |||| ||| || |||| Sbjct 535687 TAGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGACGCCGTAA 535746 Query 550407 TAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTA 550466 | ||||| |||||||||||||| || || || ||||| || || ||||| |||||| | Sbjct 535747 TTACTGTTCCAGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGA 535806 Query 550467 TTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATG 550526 || |||| | || ||| | ||||| ||||| ||||| || || |||||| |||| |||| Sbjct 535807 TTTCTGGTTTGAACGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTATG 535866 Query 550527 GACTTGATAAACATAATGATCAAGAACTTAATGTACTCATCTTTGA---TTGTGGAGGTA 550583 ||||||||| | | || | |||| ||||| || || ||||| | |||| |||| Sbjct 535867 GACTTGATAGAAAGGGTGGTGGCGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGTA 535926 >seq150 Length=99316 Score = 145 bits (160), Expect = 6e-29 Identities = 327/485 (67%), Gaps = 11/485 (2%) Strand=Plus/Plus Query 550026 GTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAA 550085 ||||||| |||| | |||||| ||||||||||||||||||||||| || || | | Sbjct 47730 GTGTTGGAGTTTTCAAGAATGGTCGTGTTGAAATTATTGCCAATGATCAGGGCAATCGTA 47789 Query 550086 CTACTCCATCTTATGTTTCTTTCAC---GGAAACTGAACATTTAGTTGGTGATGCAGCAA 550142 |||||| || ||||| |||| || |||| ||| | | | |||| ||||| || | Sbjct 47790 TTACTCCGTCGTATGTAGCTTTTACACCGGAAGGTGAGCGTCTGATTGGCGATGCCGCGA 47849 Query 550143 AATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAA 550202 || |||| || |||||| ||||| | || |||||||| ||| | |||| Sbjct 47850 AAAATCAGTTGACCACCAATCCTGAGAATACGGTATTCGATGCTAAGCGTATGGTTGGTC 47909 Query 550203 GAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTA 550262 || | || || | |||| || ||| || ||||| || | | ||||| Sbjct 47910 GAGAATGGTCGGACAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCATTT-ACAGTGTTA 47968 Query 550263 -ATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAATT-TTC 550320 | || || || | || || ||| | || || || |||| ||| Sbjct 47969 GAAAAATCGAACAAGCCGAACGTTCAACTCACTGTTAGCGG---TGAAAAGAAATTGTTC 48025 Query 550321 AC--CAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTT 550378 || | ||| |||||||| | |||||||| ||||||||||| ||| ||| |||| | Sbjct 48026 ACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAAGCTTAT 48085 Query 550379 GTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAA 550438 | || ||||||| | |||| || | || || || || ||||| || || ||||| Sbjct 48086 TTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCTGCTTATTTCAACGATGCACAA 48145 Query 550439 CGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAAT 550498 ||||||||||| |||||||| || |||||||| |||||||| |||| || |||||| Sbjct 48146 CGTCAAGCTACCAAAGATGCGGGCACCATTGCTGGTCTTAATGTAGTTCGAATCATCAAT 48205 Query 550499 GAACC 550503 ||||| Sbjct 48206 GAACC 48210 Score = 100 bits (110), Expect = 2e-15 Identities = 255/386 (66%), Gaps = 8/386 (2%) Strand=Plus/Plus Query 552205 GTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTTCTG 552264 || ||||||| || || ||||||||||| ||||| || | ||||| | | |||||| Sbjct 48940 GTATTAATCCTGACGAAGCTGTTGCCTACGGTGCTGCGGTACAAGCTGGCGTAATTTCTG 48999 Query 552265 GACAAACTGATGAAAA-ACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTCTT 552323 | ||| ||| | ||| | | ||||||| | || || | ||| | || | Sbjct 49000 G------TGAAGAAGATACTGGTGA-TCTTGTACTGTTGGACGTCAATCCGTTGACTTTG 49052 Query 552324 GGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTCCT 552383 || | ||||| || || || | ||||| || || || || ||||| | || Sbjct 49053 GGAATTGAAACTGTCGGCGGAGTGATGACGAAACTGATTCCCAGGAATACGGTAGTGCCG 49112 Query 552384 TGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTCAA 552443 || ||||| | |||| ||| | | || ||||| | | ||||| |||||| Sbjct 49113 ACCAAGAAATCGCAGATATTCAGTACCGCTGCCGACAATCAGCCCACGGTTACTATTCAA 49172 Query 552444 ATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTAATTTA 552503 |||| ||||| ||| || | | || ||||| ||| | | ||||| | || || | Sbjct 49173 GTTTTCGAAGGCGAACGACCAATGACAAAAGACAATCACCTTCTTGGCAAGTTCGATCTT 49232 Query 552504 GAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGAT 552563 || || ||||| ||||||||||| || || ||||||||||| || || ||||| ||| Sbjct 49233 ACTGGCATACCTCCGGCTCCTCGTGGGGTGCCACAAATTGAAGTGACGTTTGATATTGAT 49292 Query 552564 GCCAATGGAATTTTGAATGTGACTGC 552589 | || || |||||| | || || || Sbjct 49293 GTGAACGGCATTTTGCACGTCACCGC 49318 >seq155 Length=96529 Score = 113 bits (124), Expect = 4e-19 Identities = 125/164 (76%), Gaps = 2/164 (1%) Strand=Plus/Plus Query 370652 TGCAACTGATGATGAAATTAAAAAAGCATACAAAAAACTAGCAATGAAATATCATCCTGA 370711 ||| || || ||||||||||||||||| || || | || |||||||||||||||| Sbjct 16155 TGCCACGGAAGATGAAATTAAAAAAGCTTATCGGAAGATGGCGTTGAAATATCATCCTGA 16214 Query 370712 TAGAAACAAAAGTCCTGATGCTGAAGAAAAGTTTaaaaaaaTTAGCA-ATGCACATGGTA 370770 | ||||||||||||||||| ||| || |||||| ||||| ||| | ||| | | | Sbjct 16215 CAAGAACAAAAGTCCTGATGCAGAAAGCAAATTTAAAGAAATT-GCAGAAGCATACGATG 16273 Query 370771 TTCTTTCTGATCCTGAAAAGAAACAAACTTATGATAGATTTGGT 370814 |||| |||| || |||||||| ||| || |||| ||||||| Sbjct 16274 TTCTGAGTGATGCTAAAAAGAAAGAAATATACGATAAATTTGGT 16317 >seq20 Length=498608 Score = 113 bits (124), Expect = 4e-19 Identities = 111/141 (79%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 |||||||| || | | ||||||||| || |||||||||||||||||||||||||| | Sbjct 325150 CCGGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 325209 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| ||| ||||| || | || | || ||| | ||||| ||||| |||||||| Sbjct 325210 TTTACATTCTCTATTGTGTC-GGATGGTTCCACTTCCAAAGTAATGGTTTTTCCAGTAAG 325268 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||||||||| Sbjct 325269 GGTCTTAACAAAAATTTGCAT 325289 Score = 109 bits (120), Expect = 4e-18 Identities = 111/142 (78%), Gaps = 2/142 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 |||||||| || | | ||||||||| || |||||||||||||||||||||||||| | Sbjct 298858 CCGGCAAATATTAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTACCT 298917 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||| ||||| || | || | || ||| | ||| | ||||| |||||||| Sbjct 298918 TTCACATTCTCTATTGTGTC-GGATGGTTCCACTTCCAAAGTGATGGTTTTTCCAGTAAG 298976 Query 563454 AGTTTTAACGAAAATTTGCATA 563475 |||||||| |||||||||||| Sbjct 298977 CGTTTTAACAAAAATTTGCATA 298998 Score = 104 bits (114), Expect = 2e-16 Identities = 111/145 (77%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | | ||||||||| || |||||||||||||||||||||||||| Sbjct 326279 TTACCAGCAAATATTAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTG 326338 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTAC--ATTCGAGAGTAACAGTTTTACCAG 563449 |||||| ||| |||||||| || || | ||| | ||| | ||||| |||| Sbjct 326339 CTTTTTACATTCTCTATTGTATC--TGACGGTTCGACTTCCAAAGTGATGGTTTTTCCAG 326396 Query 563450 TAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || ||||| ||||||||||| Sbjct 326397 TAAGCGTCTTAACAAAAATTTGCAT 326421 Score = 102 bits (112), Expect = 7e-16 Identities = 113/148 (76%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 563328 TTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAAT 563387 || ||| || ||||| || | | ||||||||| || ||||||||||||||||||||||| Sbjct 299136 TTATTTACCAGCAAATATCAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTGAAT 299195 Query 563388 TTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTAC 563446 ||| |||||| ||| ||||| || | || | || || | ||| | ||||| | Sbjct 299196 TTTGCCTTTTACATTCTCTATTGTGTC-GGATGGTTCCACCTCCAAAGTGATGGTTTTTC 299254 Query 563447 CAGTAAGAGTTTTAACGAAAATTTGCAT 563474 ||||||| || ||||| ||||||||||| Sbjct 299255 CAGTAAGGGTCTTAACAAAAATTTGCAT 299282 Score = 102 bits (112), Expect = 7e-16 Identities = 109/142 (77%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 ||||||||||| | | ||||||||| || |||||||| |||||||| || ||||| | Sbjct 325718 CCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 325777 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTAC--ATTCGAGAGTAACAGTTTTACCAGTAA 563452 ||||| ||| |||||||| || || | ||| | ||||| ||||| ||||||| Sbjct 325778 TTTACATTCTCTATTGTATC--TGACGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTAA 325835 Query 563453 GAGTTTTAACGAAAATTTGCAT 563474 | || ||||| ||||||||||| Sbjct 325836 GTGTCTTAACAAAAATTTGCAT 325857 Score = 98.7 bits (108), Expect = 8e-15 Identities = 110/145 (76%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | | ||||||||| || |||||||| ||||||||||||||||| Sbjct 325430 TTACCAGCAAATATCAAACGTTGCTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTA 325489 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTAC--ATTCGAGAGTAACAGTTTTACCAG 563449 ||| || ||| |||||||| || || | ||| | ||||| ||||| |||| Sbjct 325490 CTTTTCACATTCTCTATTGTATC--TGACGGTTCGACTTCCAAAGTAATGGTTTTCCCAG 325547 Query 563450 TAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || ||||| ||||||||||| Sbjct 325548 TAAGTGTCTTAACAAAAATTTGCAT 325572 Score = 98.7 bits (108), Expect = 8e-15 Identities = 110/145 (76%), Gaps = 4/145 (3%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || ||||||||||| | | ||||||||| || |||||||| |||||||| || ||||| Sbjct 326000 TTACCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTG 326059 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTAC--ATTCGAGAGTAACAGTTTTACCAG 563449 |||||| ||| |||||||| || || | ||| | ||| | ||||| |||| Sbjct 326060 CCTTTTACATTCTCTATTGTATC--TGACGGTTCGACTTCCAAAGTGATGGTTTTTCCAG 326117 Query 563450 TAAGAGTTTTAACGAAAATTTGCAT 563474 |||| || ||||| ||||||||||| Sbjct 326118 TAAGCGTCTTAACAAAAATTTGCAT 326142 Score = 95.1 bits (104), Expect = 1e-13 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| || | | ||||||||| || |||||||| ||||||||||||||||| | Sbjct 298576 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTACCT 298635 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||| ||||| || | || | || ||| | ||| | |||||| ||||| || Sbjct 298636 TTCACATTCTCTATTGTGTC-GGATGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTGAG 298694 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||||||||| Sbjct 298695 GGTCTTAACAAAAATTTGCAT 298715 Score = 91.5 bits (100), Expect = 1e-12 Identities = 109/146 (75%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | ||||||||||||||||||||| ||||| ||||| |||||||| Sbjct 343776 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 343835 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA--TTCGAGAGTAACAGTTTTACCAG 563449 ||| || || || || || || || || ||| || || | |||||| |||| Sbjct 343836 CTTTTAACATTTTCGATGGTGTC--TGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAG 343893 Query 563450 TAAGAGTTTTAACGAAAATTTGCATA 563475 ||||||| || || || || |||||| Sbjct 343894 TAAGAGTCTTCACAAATATCTGCATA 343919 Score = 89.7 bits (98), Expect = 4e-12 Identities = 106/141 (75%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 || ||||| || | | ||||||||| || |||||||| |||||| |||||||||| | Sbjct 324868 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTACCTTGAATTTTACCT 324927 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 || || ||| ||||| || | || | || ||| | ||| | |||||| ||||| || Sbjct 324928 TTCACATTCTCTATTGTGTCGGA-TGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTGAG 324986 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 || ||||| ||||||||||| Sbjct 324987 GGTCTTAACAAAAATTTGCAT 325007 Score = 87.8 bits (96), Expect = 1e-11 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | || |||||||||||| ||||| ||||| |||||||||||||| Sbjct 342771 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 342830 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 || || ||||| ||||||| || ||| ||| | || | ||||| ||||| Sbjct 342831 CTCTTCACATTTTCAATCGTATCAGATGGCTCTAC-TTCCAATGTGATTGTTTTTCCAGT 342889 Query 563451 AAGAGTTTTAACGAAAATTTGCATA 563475 | ||||| || |||||||||||| Sbjct 342890 TAAGGTTTTCACAAAAATTTGCATA 342914 Score = 87.8 bits (96), Expect = 1e-11 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | || |||||||||||| ||||| ||||| |||||||||||||| Sbjct 343345 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 343404 Query 563392 TGTTTTACTGCCTCAATTGTATCAG-TGTGAGTACATTCGAGAGTAACAGTTTTACCAGT 563450 || || ||||| ||||||| || ||| ||| | || | ||||| ||||| Sbjct 343405 CTCTTCACATTTTCAATCGTATCAGATGGCTCTAC-TTCCAATGTGATTGTTTTTCCAGT 343463 Query 563451 AAGAGTTTTAACGAAAATTTGCATA 563475 | ||||| || |||||||||||| Sbjct 343464 TAATGTTTTCACAAAAATTTGCATA 343488 Score = 86.0 bits (94), Expect = 5e-11 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 563332 TTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTT 563391 || || ||||| || | | |||||||||||| |||||||| ||||| || || ||||| Sbjct 299423 TTACCAGCAAATATCAAACGTTGCTGATCAGGTGGAATTCCCTCTTTGTCCTGTATTTTG 299482 Query 563392 TGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGT 563450 |||||| || || || || | || | || ||| | ||| | ||||| ||||| Sbjct 299483 CCTTTTACATTTTCTATAGTGTC-GGATGGCTCCACTTCCAAAGTGATGGTTTTCCCAGT 299541 Query 563451 AAGAGTTTTAACGAAAATTTGCAT 563474 ||| |||||||||||||| ||||| Sbjct 299542 AAGCGTTTTAACGAAAATCTGCAT 299565 >seq66 Length=219686 Score = 102 bits (112), Expect = 7e-16 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 367540 GAACGTATTGGAAGATGGATTGACGTAAAAAATGAATATAAAACAATGGATACTAATTTC 367599 ||||| |||| ||||||| || | |||||||| |||||||| | || | | |||| Sbjct 69034 GAACGGCTTGGTCGATGGATAGATTTTAAAAATGATTATAAAACTTTATATCCAAGTTTC 69093 Query 367600 ATGGAATCTGTTATTTGGGCATTTAAACAATTATACGAACGCGGTATGATTTTTGAAGGT 367659 ||||||||||| |||| ||| ||||| |||| | ||| | | | |||| Sbjct 69094 ATGGAATCTGTATGGTGGGTATTCAAACAGCTATATAACAAAGGTCTTGTCTACAGAGGT 69153 Query 367660 TATAAAGTAATGCCATATTCAACTGGTTGTAATACTGCTTTGTCACATTTTGAAGCCAAA 367719 ||||| ||||||| ||| |||| ||| ||| | |||||| |||||||| | | Sbjct 69154 GTAAAAGTGATGCCATTTTCTACTGCTTGCGGAACTCCATTGTCAAATTTTGAATCTGGA 69213 Query 367720 CAAAATTATCGAGAAGTAGTTGATCC 367745 ||||||||| |||||| ||||||| Sbjct 69214 CAAAATTATAAAGAAGTCATTGATCC 69239 >seq3603 Length=332 Score = 98.7 bits (108), Expect = 8e-15 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 ||||||||||| | | ||||||||| || |||||||| |||||||| || ||||| | Sbjct 151 CCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 210 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| || || ||||| | || | || ||| | ||| | ||||| |||||||| Sbjct 211 TTTACATTTTCTATAGTATC-GGATGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTAAG 269 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 |||||||||||||| ||||| Sbjct 270 CGTTTTAACGAAAATCTGCAT 290 >seq2999 Length=368 Score = 95.1 bits (104), Expect = 1e-13 Identities = 107/141 (76%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 563335 CCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGT 563394 ||||||||||| | | ||||||||| || |||||||| |||||||| || ||||| | Sbjct 182 CCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 123 Query 563395 TTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAGAGTAACAGTTTTACCAGTAAG 563453 ||||| || || ||||| | | | || ||| | ||| | ||||| |||||||| Sbjct 122 TTTACATTTTCTATAGTATC-GGACGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTAAG 64 Query 563454 AGTTTTAACGAAAATTTGCAT 563474 |||||||||||||| ||||| Sbjct 63 CGTTTTAACGAAAATCTGCAT 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028947279541060