Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq20 127 2e-24 >seq20 Length=498608 Score = 127 bits (140), Expect = 2e-24 Identities = 118/150 (79%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 101320 CAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTG 101379 ||||| ||||| |||||||||||||| || ||||| || ||||| |||||||||||||| Sbjct 299133 CAATTATTTACCAGCAAATATCAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTG 299192 Query 101380 AATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTT 101439 |||||| ||||||| | |||| ||||| || | |||||| || | ||||| ||||| Sbjct 299193 AATTTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACCTCCAAAGTGATGGTTTT 299252 Query 101440 GCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| || ||||| Sbjct 299253 TCCAGTAAGGGTCTTAACAAAAATTTGCAT 299282 Score = 125 bits (138), Expect = 6e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||| |||| |||||||| ||||| || ||||| || ||||| ||||||||||||||| Sbjct 298849 AACTGCATACCGGCAAATATTAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGA 298908 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||| ||| | |||| ||||| || | ||||||||| | ||||| ||||| Sbjct 298909 ATTTTACCTTTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTT 298968 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||||| ||||| || ||||| Sbjct 298969 CCAGTAAGCGTTTTAACAAAAATTTGCAT 298997 Score = 125 bits (138), Expect = 6e-24 Identities = 117/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 || ||| |||| |||||||||||||| || ||||| || ||||| ||||||||||||||| Sbjct 325141 AACTGCATACCGGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGA 325200 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 ||||| ||||||| | |||| ||||| || | ||||||||| | ||| | ||||| Sbjct 325201 ATTTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTAATGGTTTTT 325260 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | || || ||||| || ||||| Sbjct 325261 CCAGTAAGGGTCTTAACAAAAATTTGCAT 325289 Score = 122 bits (134), Expect = 7e-23 Identities = 114/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| |||||||||||||| || ||||| || ||||| || ||||| || || ||||| Sbjct 299422 CTTACCAGCAAATATCAAACGTTGCTGATCAGGTGGAATTCCCTCTTTGTCCTGTATTTT 299481 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||||||| |||||| |||||| || | |||||||| | ||||| ||||| || || Sbjct 299482 GCCTTTTACATTTTCTATAGTGTCGGATGGCTCCACTTCCAAAGTGATGGTTTTCCCAGT 299541 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | ||||| || || ||||||||| Sbjct 299542 AAGCGTTTTAACGAAAATCTGCATG 299566 Score = 120 bits (132), Expect = 2e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||| || | |||||||||||||| ||||| || || ||||| |||||||| Sbjct 327248 CTTACCAGCAAAAATGAGTCGCTGTTGATCGGGTGGAATTCCCTCCTTATCCTGAATTTT 327307 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| |||| | ||||| || | ||||||||| ||||| | ||||| || || Sbjct 327308 ACCCTTCACATTTTCAATTGTGTCTGAAGGTTCCACTTCCAGAGTAATGGTTTTCCCAGT 327367 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | |||||| |||||||||||||| Sbjct 327368 GAGAGTTTTCACAAATATCTGCAT 327391 Score = 120 bits (132), Expect = 2e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||||||||| || || ||||| |||||||||||||| |||||||||||||| Sbjct 342770 CTTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTT 342829 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| |||| | || ||||| | || ||||| | |||| ||||| || || Sbjct 342830 ACTCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGT 342889 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 ||| ||||| ||||| || ||||| Sbjct 342890 TAAGGTTTTCACAAAAATTTGCAT 342913 Score = 120 bits (132), Expect = 2e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||||||||||| || || ||||| |||||||||||||| |||||||||||||| Sbjct 343057 CTTACCAGCAAATATCAAGCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTT 343116 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 || ||| |||| | || ||||| | || ||||| | |||| ||||| || || Sbjct 343117 ACTCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGT 343176 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 ||| ||||| ||||| || ||||| Sbjct 343177 TAAGGTTTTCACAAAAATTTGCAT 343200 Score = 118 bits (130), Expect = 8e-22 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| |||||||| ||||| || ||||| || ||||| |||||||||||||||||||| Sbjct 326279 TTACCAGCAAATATTAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTG 326338 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||||||| | |||| || || |||| ||| ||||| | ||||| ||||| || || Sbjct 326339 CTTTTTACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTA 326398 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| || ||||| Sbjct 326399 AGCGTCTTAACAAAAATTTGCAT 326421 Score = 118 bits (130), Expect = 8e-22 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||| ||||||||||| || || ||||| |||||||||||||| |||||||||||||| Sbjct 343345 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 343404 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| |||| | || ||||| | || ||||| | |||| ||||| || ||| Sbjct 343405 CTCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 343464 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 || ||||| ||||| || ||||| Sbjct 343465 AATGTTTTCACAAAAATTTGCAT 343487 Score = 116 bits (128), Expect = 3e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| |||||||||||||| || ||||| || ||||| || ||||||||||||||||| Sbjct 298574 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTAC 298633 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| | |||| ||||| || | ||||||||| | ||||| ||||| || || | Sbjct 298634 CTTTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTGA 298693 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 || || ||||| || ||||| Sbjct 298694 GGGTCTTAACAAAAATTTGCAT 298715 Score = 116 bits (128), Expect = 3e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| || | || ||||||||||| ||||| || |||||||| |||||||| Sbjct 300396 TACCAGCAAAAATGAGCCGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTGC 300455 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| |||| | | ||| || | ||||||||| ||||| | ||||| || || | Sbjct 300456 CTTTCACATTTTCAATGGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTGA 300515 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 |||||| |||||||||||||| Sbjct 300516 GAGTTTTCACAAATATCTGCAT 300537 Score = 113 bits (124), Expect = 4e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| |||||||||||||| || ||||| || ||||| || |||||| |||||||||| Sbjct 324866 TACCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTACCTTGAATTTTAC 324925 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 ||| ||| | |||| ||||| || | ||||||||| | ||||| ||||| || || | Sbjct 324926 CTTTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTGA 324985 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 || || ||||| || ||||| Sbjct 324986 GGGTCTTAACAAAAATTTGCAT 325007 Score = 113 bits (124), Expect = 4e-20 Identities = 112/145 (77%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| |||||||||||||| || ||||| || ||||| || ||||||||||||||||| Sbjct 325429 CTTACCAGCAAATATCAAACGTTGCTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTT 325488 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 ||| ||| | |||| || || |||| ||| ||||| | ||| | ||||| || || Sbjct 325489 ACTTTTCACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTAATGGTTTTCCCAGT 325548 Query 101446 TAAAGTTTTTACAAATATCTGCATG 101470 | || || ||||| || |||||| Sbjct 325549 AAGTGTCTTAACAAAAATTTGCATG 325573 Score = 109 bits (120), Expect = 4e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||||||||| || || | || ||||| || ||||||||||| ||||| |||||||| Sbjct 343776 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 343835 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 ||| ||| |||| | ||||| || | ||| ||||| || || | ||||| || || Sbjct 343836 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 343895 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | ||| || |||||||||||||| Sbjct 343896 AGAGTCTTCACAAATATCTGCAT 343918 Score = 104 bits (114), Expect = 2e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| || | ||||| ||||| || || ||||||||||| |||||||| || Sbjct 300055 TACCAGCAAAAATAAGCCGCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTAC 300114 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 |||||| | || | || || |||| || |||||||| || | |||||| || || | Sbjct 300115 TTTTTACGTTCTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 300174 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 | || || |||||||||||||| Sbjct 300175 ACGTCTTCACAAATATCTGCAT 300196 Score = 104 bits (114), Expect = 2e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 101328 TACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTT 101387 |||| ||||| || | ||||| ||||| || || ||||||||||| |||||||| || Sbjct 326909 TACCAGCAAAAATAAGCCGCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTAC 326968 Query 101388 GTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTA 101447 |||||| | || | || || |||| || |||||||| || | |||||| || || | Sbjct 326969 TTTTTACGTTCTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 327028 Query 101448 AAGTTTTTACAAATATCTGCAT 101469 | || || |||||||||||||| Sbjct 327029 ACGTCTTCACAAATATCTGCAT 327050 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396246553334058