Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 3e-14 seq20 82.4 6e-11 >seq1 Length=1320437 Score = 93.3 bits (102), Expect = 3e-14 Identities = 134/189 (71%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 9075 GATTTGTTCACAAATTAATTGAGCAATCCTGTCCCCCTTATTCACGACAAAGTCTGTGTC 9134 |||| |||||||||| | ||||||||| | || || |||||| ||| ||| ||| Sbjct 1082651 GATTCGTTCACAAATCAGTTGAGCAATTCGATCACCACGTTTCACGTGAAAATCTTGGTC 1082592 Query 9135 GGAATGATTGAACAGCACCACTCCCACGTTACCCCTGTAATCCTCATCGATCACACCAGC 9194 | | |||||| | | ||| || || || ||||||||||| | || | ||| || || Sbjct 1082591 GCCAAAATTGAAAATAATCACACCAACATTGCCCCTGTAATCTGCGTCCACCACGCCCGC 1082532 Query 9195 ACCCACGTCGATGAAGTGCTTGACCGCTAGTCCAGAGCGGGGCGCGATTCGACCGTAGCA 9254 || | ||||||| |||||| | || | ||||| || || || || ||||| ||||| Sbjct 1082531 GCCGATGTCGATGCCGTGCTTCAAAGCCAAGCCAGATCGAGGTGCAATACGACCATAGCA 1082472 Query 9255 TCCCACCGG 9263 || || || Sbjct 1082471 GCCGACAGG 1082463 >seq20 Length=498608 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 48625 TACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTT 48684 |||| ||||| || || ||||| ||||| | || | ||| || ||||| |||||| Sbjct 300055 TACCAGCAAAAATAAGCCGCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTAC 300114 Query 48685 GTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCA 48744 |||||| | | | ||||||| ||| || || | |||||||||||||| |||| Sbjct 300115 TTTTTACGTTCTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 300174 Query 48745 AAGTTTTTACAAAAATCTGCATC 48767 | || || ||||| ||||||||| Sbjct 300175 ACGTCTTCACAAATATCTGCATC 300197 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 48625 TACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTT 48684 |||| ||||| || || ||||| ||||| | || | ||| || ||||| |||||| Sbjct 326909 TACCAGCAAAAATAAGCCGCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTAC 326968 Query 48685 GTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCA 48744 |||||| | | | ||||||| ||| || || | |||||||||||||| |||| Sbjct 326969 TTTTTACGTTCTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCA 327028 Query 48745 AAGTTTTTACAAAAATCTGCATC 48767 | || || ||||| ||||||||| Sbjct 327029 ACGTCTTCACAAATATCTGCATC 327051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380906986187862