Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq4 318 4e-81 seq150 120 2e-21 seq155 104 2e-16 seq66 102 5e-16 seq20 86.0 4e-11 seq2 86.0 4e-11 >seq4 Length=942137 Score = 318 bits (352), Expect = 4e-81 Identities = 409/560 (73%), Gaps = 8/560 (1%) Strand=Plus/Plus Query 474317 ATGTCCAGAATTGCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGG 474376 ||||| | | ||| ||||| |||||||| || ||||| ||||||||||| | || | Sbjct 535320 ATGTCGAAGAATGCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTC 535379 Query 474377 CAAAATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATAT 474436 || |||||||||| ||||| ||||| || || ||||| ||| | || || ||| ||| Sbjct 535380 CAGCATGGTAAAGTTGAAATTATTGCAAACGATCAAGGGAATCGCACCACGCCAAGTTAT 535439 Query 474437 GTTTCTTTTACTGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCT 474496 ||| |||| || || || |||| || ||||| ||||| || || |||| | ||| | Sbjct 535440 GTTGCTTTCACCGATACCGAACGACTGATTGGCGATGCGGCGAAGAATCAGGTTGCGTTG 535499 Query 474497 AATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACC 474556 |||||| |||||| |||||||||| || || | || |||||| | |||||| | Sbjct 535500 AATCCTCATAATACAGTTTTTGATGCGAAGCGACTTATCGGTCGTCGATATGATGACGCT 535559 Query 474557 ACTGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCA 474616 |||| || ||||| ||| |||||||| ||||| || || |||| ||| ||||| Sbjct 535560 GCTGTGCAGTCTGACATGAAACATTGGCCGTTTAAAGTTATCAATGATGGAACGAAACCT 535619 Query 474617 TATATAGAAG--CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTT 474674 | || ||| |||||| | || || || || |||| |||||||| |||| Sbjct 535620 AAAATTCAAGTCGAATACAAG--GGCGAGACGAAGTCATTTACACCGGAAGAAATCAGCG 535677 Query 474675 CAATGGTTTTAGCCAAAATGAAACAAACCGC--GAGCTCATATCTTGGACAAGAAGTAAC 474732 | ||||| |||| || ||||| |||| || |||| ||| | ||| || || | Sbjct 535678 CTATGGTGTTAGTGAAGATGAAGGAAACTGCCGAAGCT--TATTTGGGAAAAACTGTTAA 535735 Query 474733 TGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGA 474792 || || |||||||||||||||||||||||||| |||||||| ||||| || || ||||| Sbjct 535736 GGACGCCGTAATTACTGTTCCAGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGA 535795 Query 474793 TGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGC 474852 || |||| ||| | ||| | || ||||| ||||| || || ||||||||||| || || Sbjct 535796 CGCTGGAACGATTTCTGGTTTGAACGTTTTGCGTATCATCAACGAACCAACAGCGGCTGC 535855 Query 474853 ACTTGCTTATGGTCTTGATA 474872 | |||||||||| ||||||| Sbjct 535856 AATTGCTTATGGACTTGATA 535875 >seq150 Length=99316 Score = 120 bits (132), Expect = 2e-21 Identities = 317/472 (67%), Gaps = 19/472 (4%) Strand=Plus/Plus Query 474380 AATGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTT 474439 |||||| || ||||| ||||||||||| || || ||| | | || || || ||||| Sbjct 47747 AATGGTCGTGTTGAAATTATTGCCAATGATCAGGGCAATCGTATTACTCCGTCGTATGTA 47806 Query 474440 TCTTTTACT---GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTG-CATC 474495 ||||||| ||| ||| | ||| ||||| ||||| || ||| |||| | || | | Sbjct 47807 GCTTTTACACCGGAAGGTGAGCGTCTGATTGGCGATGCCGCGAAAAATCA-GTTGACCAC 47865 Query 474496 TAATCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATAC 474555 ||||||| ||||| | || |||||||| | || ||||||| | | || | Sbjct 47866 CAATCCTGAGAATACGGTATTCGATGCTAAGCGTATGGTTGGTCGAGAATGGTCGGACAA 47925 Query 474556 CACTGTCCAATCTGATATGCGTCAT---TGGCCTTTTAAGGTGATA-AATGTTGGTGGTA 474611 | | | ||| | ||| ||| | ||||| |||| ||| || || | | | Sbjct 47926 GAGTCTTCAAGCGGAT---CGTAAAATGTGGCCATTTACAGTGTTAGAAAAATCGAAC-A 47981 Query 474612 AACCATATATAGAAG-CAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATT 474670 | || | | || || | || ||||||| ||| || | || ||| ||||| Sbjct 47982 AGCCGAACGTTCAACTCACTGTTAGC-GGTGAAAAGAAATTGTTCACTCCCGAAGAAATT 48040 Query 474671 TCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCG--AGCTCATATCTTGGACAAGAAG 474728 || | |||||||| ||||||||| ||| || |||| ||| | || |||||| Sbjct 48041 TCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAAGCT--TATTTGGGCAAAGAAG 48098 Query 474729 TAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTA 474788 | | |||| || | || ||||| || ||||| || ||| | ||||||||||| || | Sbjct 48099 TGAAAAATGCCGTCGTCACGGTTCCTGCTTATTTCAACGATGCACAACGTCAAGCTACCA 48158 Query 474789 AAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACC 474840 |||||||||| | ||||| ||||||||||| | || || || |||||||| Sbjct 48159 AAGATGCGGGCACCATTGCTGGTCTTAATGTAGTTCGAATCATCAATGAACC 48210 Score = 111 bits (122), Expect = 1e-18 Identities = 246/366 (67%), Gaps = 6/366 (2%) Strand=Plus/Plus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 |||||||| ||||||||||| || || ||||| || ||||| | | | || ||| || Sbjct 48945 AATCCTGACGAAGCTGTTGCCTACGGTGCTGCGGTACAAGCTGGCGTAATTTCTGGTGAA 49004 Query 475853 TCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCTT 475912 || ||| ||| | || ||||||| | ||||| | ||| | | || || || Sbjct 49005 ---GA--AGATACTGG-TGATCTTGTACTGTTGGACGTCAATCCGTTGACTTTGGGAATT 49058 Query 475913 GAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAAA 475972 ||||| || || || | ||||| || || ||| ||| ||||| | || ||| Sbjct 49059 GAAACTGTCGGCGGAGTGATGACGAAACTGATTCCCAGGAATACGGTAGTGCCGACCAAG 49118 Query 475973 AAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTTT 476032 ||||| | |||| || | | || ||||| | || || || || ||| | || Sbjct 49119 AAATCGCAGATATTCAGTACCGCTGCCGACAATCAGCCCACGGTTACTATTCAAGTTTTC 49178 Query 476033 GAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGT 476092 ||||| ||| || | | || ||||| ||| || ||||| | || ||||| || Sbjct 49179 GAAGGCGAACGACCAATGACAAAAGACAATCACCTTCTTGGCAAGTTCGATCTTACTGGC 49238 Query 476093 ATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAAT 476152 || ||||| ||||| | || || || ||||||||||| || ||||||||||||| || Sbjct 49239 ATACCTCCGGCTCCTCGTGGGGTGCCACAAATTGAAGTGACGTTTGATATTGATGTGAAC 49298 Query 476153 GGTATT 476158 || ||| Sbjct 49299 GGCATT 49304 Score = 93.3 bits (102), Expect = 3e-13 Identities = 111/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 290852 GGTTCATTTATAATTCTTAATACATCAAGACCTGCAATTTTTGCCGAATCTAAAGTTGCC 290911 |||||||| || |||| | ||||| |||||| ||||| | ||| |||| || || Sbjct 48210 GGTTCATTGATGATTCGAACTACATTAAGACCAGCAATGGTGCCCGCATCTTTGGTAGCT 48151 Query 290912 TGGCGTTGCGCATCATTAAAATAAGCAGGGACTGTAATAACAGCtttttccactttcttt 290971 || ||||| ||||| || ||||||||||| || || | || || |||| ||||| || Sbjct 48150 TGACGTTGTGCATCGTTGAAATAAGCAGGAACCGTGACGACGGCATTTTTCACTTCTTTG 48091 Query 290972 ttcaaataattttctgccatttgttttattt 291002 ||||||| ||| || |||| ||| |||| Sbjct 48090 CCCAAATAAGCTTCGGCAATTTCTTTCATTT 48060 >seq155 Length=96529 Score = 104 bits (114), Expect = 2e-16 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 299114 GAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGACAGAAAT 299173 ||||| || ||||||||||||||| || | || |||||||||||||||||| || Sbjct 16162 GAAGATGAAATTAAAAAAGCTTATCGGAAGATGGCGTTGAAATATCATCCTGACAAGAAC 16221 Query 299174 AAAAGTCCTGAAGCGGAAGAAAAGTTTaaaaaaaTAAGTCATGCTTATAGTATTCTTTCA 299233 ||||||||||| || ||| || |||||| |||| | || || | |||| Sbjct 16222 AAAAGTCCTGATGCAGAAAGCAAATTTAAAGAAATTGCAGAAGCATACGATGTTCTGAGT 16281 Query 299234 GATCCAACCAAAAAAGAAGTATATGATAAATTTGGAGAAGAAGGATTAAA 299283 ||| | | || |||||| |||| ||||||||||| |||||||| || || Sbjct 16282 GATGCTAAAAAGAAAGAAATATACGATAAATTTGGTGAAGAAGGCTTGAA 16331 >seq66 Length=219686 Score = 102 bits (112), Expect = 5e-16 Identities = 144/200 (72%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 296075 TTGGAAGATGGATTGATATTAATAATGAATATAAAACAATGGATAAAAATTTTATGGAAT 296134 |||| ||||||| ||| |||| ||||| |||||||| | || || ||| ||||||| Sbjct 69041 TTGGTCGATGGATAGATTTTAAAAATGATTATAAAACTTTATATCCAAGTTTCATGGAAT 69100 Query 296135 CTGTTATTTGGTCATTTAAACAACTTTATGA-AAAGGAAATGATTTTTGAAGGTTATAAA 296193 |||| ||| ||| ||||| || ||| | ||||| || | || | || ||| Sbjct 69101 CTGTATGGTGGGTATTCAAACAGCTATATAACAAAGGTCTTGTCTACAGAGGTGTA-AAA 69159 Query 296194 GTTATGCCTTATTCTACTGGTTGCAATACACCATTATCTCATTTTGAGGCAAAACAAAAT 296253 || ||||| | |||||||| |||| || ||||| || ||||||| | ||||||| Sbjct 69160 GTGATGCCATTTTCTACTGCTTGCGGAACTCCATTGTCAAATTTTGAATCTGGACAAAAT 69219 Query 296254 TATAAAGAGATTATTGATCC 296273 |||||||| | |||||||| Sbjct 69220 TATAAAGAAGTCATTGATCC 69239 >seq20 Length=498608 Score = 86.0 bits (94), Expect = 4e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 ||||||||||| || ||||||||||| || |||||||| || || || ||||| || | Sbjct 300398 CCAGCAAAAATGAGCCGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTGCCT 300457 Query 480693 TTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGA 480752 || ||| |||||| | || | | || ||| || ||||| ||||| || |||||| Sbjct 300458 TTCACATTTTCAATGGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTGAGA 300517 Query 480753 GTCTTAACGAAAATTTG 480769 || || || || || || Sbjct 300518 GTTTTCACAAATATCTG 300534 >seq2 Length=1307690 Score = 86.0 bits (94), Expect = 4e-11 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 || || ||||| || || | |||||||| ||||| ||||||||||||||||| |||||| Sbjct 1122968 GGCATACCTCCGGCCCCTCGTGGAGTTCCACAAATAGAAGTTACTTTTGATATCGATGCA 1123027 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGAT 476179 |||||||| || |||| | |||| | ||| Sbjct 1123028 AATGGTATAGTTCATGTCAGTGCTCGAGAT 1123057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267896351345912