Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq4 300 2e-76 seq150 156 6e-33 seq20 143 4e-29 seq2999 107 3e-18 seq3603 104 3e-17 seq72 100 4e-16 >seq4 Length=942137 Score = 300 bits (332), Expect = 2e-76 Identities = 554/808 (69%), Gaps = 7/808 (1%) Strand=Plus/Plus Query 195299 GCTATTGGTATCGATTTAGGAACTACTTACTCATGTGTTGGTGTATGGCAAAATGATCGT 195358 |||||||| || ||||| || ||||| ||| |||||||| || | || ||| | Sbjct 535332 GCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 535391 Query 195359 GTAGAGATTATCCCGAATGACCAAGGAAACCGTACAACTCCATCGTACGTTGCCTTTACA 195418 || || ||||| | || || ||||| || || || || ||| || ||||| || || Sbjct 535392 GTTGAAATTATTGCAAACGATCAAGGGAATCGCACCACGCCAAGTTATGTTGCTTTCACC 535451 Query 195419 GATAATGAACGTCTCGTTGGAGATGCCGCAAAAAATCAGACAGCTATGAACCCTATCAAT 195478 |||| ||||| || |||| ||||| || || |||||| || |||| ||| ||| Sbjct 535452 GATACCGAACGACTGATTGGCGATGCGGCGAAGAATCAGGTTGCGTTGAATCCTCATAAT 535511 Query 195479 ACTGTCTTTGACGCGAAGCGTCTTATTGGTCGCAAGTTTTCGGATAAGAAAGTCCAAGAC 195538 || || ||||| |||||||| ||||| ||||| | | || || || Sbjct 535512 ACAGTTTTTGATGCGAAGCGACTTATCGGTCGTCGATATGATGACGCTGCTGTGCAGTCT 535571 Query 195539 GATATAAAGGACTGGTCTTATGAAGTTGTTCCCGGTGTGGCTGATAAGCCTATGATTAAT 195598 || || || | ||| | | | ||||| | | || | || |||| ||| | Sbjct 535572 GACATGAAACATTGGCCGTTTAAAGTTATCAATGATGGAACG---AAACCTAAAATTCAA 535628 Query 195599 GTTGAATTTCACGGTGAGAAGAAACAATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTG 195658 || |||| | || |||| ||| |||| | || |||||||| |||||||||| Sbjct 535629 GTCGAATACAAGGGCGAGACGAAGTCATTTACACCGGAAGAAATCAGCGCTATGGTGTTA 535688 Query 195659 ATTAAGATGAAGGAGACTGCGGAATCTTTCATGGGTAAAACTGTGAAAGATGCAGTTGTG 195718 | ||||||||||| ||||| ||| ||| |||| |||||||| || || || || | Sbjct 535689 GTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGACGCCGTAATT 535748 Query 195719 ACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCGACAAAGGACGCTGCTGCTATT 195778 ||||| || || || || | ||||| || || |||||||| || ||||||| | ||| Sbjct 535749 ACTGTTCCAGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGATT 535808 Query 195779 GCGGGTCTAAACTGTCTTAGAATTATCAATGAACCAACAGCGGCTGCAATTGCTTATGGT 195838 | ||| | ||| | | | || ||||| ||||||||||||||||||||||||||||| Sbjct 535809 TCTGGTTTGAACGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTATGGA 535868 Query 195839 CTGGACAAGAACAAGGACGAAGATAA--AAATGTATTGATCTTTGATCTCGGTGGTGGTA 195896 || || |||| | || | | || |||||| |||| ||||| || |||||||||| Sbjct 535869 CTTGA-TAGAA-AGGGTGGTGGCGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGTA 535926 Query 195897 CGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATATTCGAAGTAAAGGCTACTGCTG 195956 | |||||||| || || | | || || | |||||| || ||||| ||| |||| |||| Sbjct 535927 CATTTGATGTGTCTATTTTGACAATCGAGGATGGTATCTTTGAAGTCAAGTCTACCGCTG 535986 Query 195957 GTGATACTCATCTAGGTGGTGAAGATTTCGATGCACGTCTTCTCCGTCATTTGTCTGATG 196016 |||| ||||| | |||||||| || ||||| || | | |||||| | || Sbjct 535987 GTGACACTCACTTGGGTGGTGAGGACTTCGACAATCGCATGGTAAATCATTTCGTGGCTG 536046 Query 196017 AGTTCCGTCGAAAGAATAAGAAAGATATTTCTGGAAATCCTAGGGCTCTTCGTCGGCTTA 196076 |||| |||||||| |||||||| || || ||||| | || | ||||| | Sbjct 536047 AGTTTAAACGAAAGAACAAGAAAGACATGTCATCTAATCCACGCGCATTGCGTCGTTTGC 536106 Query 196077 GGACTGCATGTGAACGTGCCAAACGAAC 196104 | || || |||||||| || ||||| || Sbjct 536107 GCACAGCTTGTGAACGAGCGAAACGCAC 536134 Score = 91.5 bits (100), Expect = 2e-13 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 196448 GTCCAAGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGT 196507 || |||||||| ||||| |||||||| |||| | || ||||| ||||||| || || Sbjct 536616 GTTCAAGATCTGCTGCTTCTTGATGTAACACCTCTTTCGTTGGGTATTGAAACCGCAGGG 536675 Query 196508 GGTGTTATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGA--ACAAG 196565 |||||||||||| | | ||| | | ||||| || || || || | ||| | |||| Sbjct 536676 GGTGTTATGACTGCATTGATTAAACGCAACACTACCATCCCTAC--AAAAGTATCGCAAG 536733 Query 196566 TCTTTTCAACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAAC 196625 | || | || || || || ||||| || || || |||||||| || |||||||| | Sbjct 536734 TGTTCACTACTTACTCGGACAATCAGCCCGGAGTATTAATTCAAGTGTACGAAGGAGAGC 536793 Query 196626 G 196626 | Sbjct 536794 G 536794 >seq150 Length=99316 Score = 156 bits (172), Expect = 6e-33 Identities = 329/485 (68%), Gaps = 8/485 (2%) Strand=Plus/Plus Query 195333 GTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTA 195392 ||||||| || | | |||| |||||| || ||||| | ||||| || || || |||| Sbjct 47730 GTGTTGGAGTTTTCAAGAATGGTCGTGTTGAAATTATTGCCAATGATCAGGGCAATCGTA 47789 Query 195393 CAACTCCATCGTACGTTGCCTTTACA---GATAATGAACGTCTCGTTGGAGATGCCGCAA 195449 ||||| ||||| || || |||||| || ||| ||||| |||| |||||||| | Sbjct 47790 TTACTCCGTCGTATGTAGCTTTTACACCGGAAGGTGAGCGTCTGATTGGCGATGCCGCGA 47849 Query 195450 AAAATCAGACAGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGGTC 195509 |||||||| | | || ||| ||||| || || || || |||||| | |||||| Sbjct 47850 AAAATCAGTTGACCACCAATCCTGAGAATACGGTATTCGATGCTAAGCGTATGGTTGGTC 47909 Query 195510 GCAAGTTTTCGGATAAGAAAGTCCAAGACGATATAAAGGACTGGTCTTATGAAGTTGTTC 195569 | | | ||||| |||| | |||| ||| || ||| | | | ||| ||| Sbjct 47910 GAGAATGGTCGGACAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCATTTACAGT-GTTA 47968 Query 195570 CCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACAATTTG 195629 | | | ||||| | || | | || |||||| |||||| || Sbjct 47969 GAAAAATCGA--ACAAGCCGAACGTTCAACTCACTGTTAGCGGTGAAAAGAAATTGTTCA 48026 Query 195630 CTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATCTTTCA 195689 |||||||||||||||| | ||||| ||| | || ||||| || | ||| ||| ||| Sbjct 48027 CTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAAGCTTATT 48086 Query 195690 TGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAAC 195749 |||| ||| |||||| |||| || || || || |||||||| |||| ||| |||||| Sbjct 48087 TGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCTGCTTATTTCAACGATGCACAAC 48146 Query 195750 GACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAAT 195808 | || || || || || || | | ||||| ||||| || ||| || |||| |||||| Sbjct 48147 GTCAAGCTACCAAAGATGCGGGCACCATTGCTGGTCTTAA-TGTAGTTCGAATCATCAAT 48205 Query 195809 GAACC 195813 ||||| Sbjct 48206 GAACC 48210 Score = 87.8 bits (96), Expect = 2e-12 Identities = 115/159 (72%), Gaps = 3/159 (2%) Strand=Plus/Plus Query 195815 ACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTATTG 195874 || || |||||||||||||||||||||||||| || ||| ||| |||||| | || Sbjct 48264 ACTGCTGCTGCAATTGCTTATGGTCTGGACAAAAAGGAGGGTGAA---AAAAATATTTTA 48320 Query 195875 ATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTGAAGGTGGTATA 195934 | | |||||| || ||||| ||||| || || | | || | |||||| |||| | Sbjct 48321 GTTTATGATCTTGGAGGTGGAACGTTCGACGTTACTTTGCTTACTATTGATAATGGTGTT 48380 Query 195935 TTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGT 195973 || ||||| | ||| ||||||||||||| | ||| Sbjct 48381 TTTGAAGTGCTCTCGACTAATGGTGATACTCATTTGGGT 48419 >seq20 Length=498608 Score = 143 bits (158), Expect = 4e-29 Identities = 118/144 (82%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||||||||||||||| ||||| | ||||| || | || Sbjct 299282 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACCATCACTTTGGAGGTGGAACCATCC 299223 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | |||| ||| ||||||||||| ||||| |||||||| |||||| Sbjct 299222 GACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAG 299163 Query 171982 CAACGACTTATTTTTGCTGGTAAA 172005 ||||| | || |||||||||||| Sbjct 299162 CAACGTTTGATATTTGCTGGTAAA 299139 Score = 134 bits (148), Expect = 2e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || |||||||| || | || |||||||| || || || || |||||| ||||| Sbjct 300196 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 300137 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || ||| | ||| ||||||||||| || |||||||| ||||| |||||| Sbjct 300136 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAG 300077 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || |||||||||||||||| Sbjct 300076 CAGCGGCTTATTTTTGCTGGTA 300055 Score = 134 bits (148), Expect = 2e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || |||||||| || | || |||||||| || || || || |||||| ||||| Sbjct 327050 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 326991 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || ||| | ||| ||||||||||| || |||||||| ||||| |||||| Sbjct 326990 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAG 326931 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 || || |||||||||||||||| Sbjct 326930 CAGCGGCTTATTTTTGCTGGTA 326909 Score = 134 bits (148), Expect = 2e-26 Identities = 116/144 (81%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 171861 TATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTC 171920 |||||| || |||||||| || ||||||||||||||||| || || || ||||| | || Sbjct 343919 TATGCAGATATTTGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATC 343860 Query 171921 AGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCA 171980 |||||| ||||| || | ||| || ||||| ||||||||||||||||| || ||||| Sbjct 343859 AGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCA 343800 Query 171981 GCAACGACTTATTTTTGCTGGTAA 172004 |||| || | || ||||| ||||| Sbjct 343799 GCAAAGATTAATCTTTGCAGGTAA 343776 Score = 132 bits (146), Expect = 6e-26 Identities = 115/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || |||||||||||||| ||||| | || || || ||||| Sbjct 326421 ATGCAAATTTTTGTTAAGACGCTTACTGGAAAAACCATCACTTTGGAAGTCGAACCGTCA 326362 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | ||| ||| ||||||||||| ||||| |||||||| |||||| Sbjct 326361 GATACAATAGAGAATGTAAAAAGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAG 326302 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | || ||||||||||| Sbjct 326301 CAACGTTTAATATTTGCTGGTAA 326279 Score = 131 bits (144), Expect = 2e-25 Identities = 117/147 (80%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 171857 GTAGTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGT 171916 || |||||||||| ||||| ||||| |||||||||||||| ||||| | || || || Sbjct 299002 GTGGTATGCAAATTTTTGTTAAAACGCTTACTGGAAAAACCATCACTTTGGAAGTGGAAC 298943 Query 171917 CGTCAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCG 171976 | || |||||||| || || | |||| || ||||||||||| ||||| |||||||| | Sbjct 298942 CATCCGACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAAGGAATTCCACCAG 298883 Query 171977 ATCAGCAACGACTTATTTTTGCTGGTA 172003 |||||||||| | || ||||| |||| Sbjct 298882 ATCAGCAACGTTTAATATTTGCCGGTA 298856 Score = 131 bits (144), Expect = 2e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 |||||||||| |||||||||||| | ||||||||||| ||||| | || || ||| | | Sbjct 342915 GTATGCAAATTTTTGTGAAAACCTTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 342856 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | || || || || || | || || ||||||||||||||||||||||| || |||| Sbjct 342855 CTGATACGATTGAAAATGTGAAGAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATC 342796 Query 171980 AGCAACGACTTATTTTTGCTGGTAA 172004 |||||||| | || ||||||||||| Sbjct 342795 AGCAACGATTGATATTTGCTGGTAA 342771 Score = 127 bits (140), Expect = 3e-24 Identities = 114/143 (80%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| || ||||| ||||| || || || || || || | ||| Sbjct 327391 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCTTCA 327332 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | || | || ||||| |||||||| || |||||||||||||| Sbjct 327331 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAGGAGGGAATTCCACCCGATCAA 327272 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 || ||||| |||||||||||||| Sbjct 327271 CAGCGACTCATTTTTGCTGGTAA 327249 Score = 127 bits (140), Expect = 3e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 |||||||||| |||||||||||| | ||||||||||| ||||| | || || ||| | | Sbjct 343202 GTATGCAAATTTTTGTGAAAACCTTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 343143 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | || || || || || | || || ||||||||||||||||||||||| || |||| Sbjct 343142 CTGATACGATTGAAAATGTGAAGAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATC 343083 Query 171980 AGCAACGACTTATTTTTGCTGGTAA 172004 ||||||| | || ||||||||||| Sbjct 343082 AGCAACGCTTGATATTTGCTGGTAA 343058 Score = 127 bits (140), Expect = 3e-24 Identities = 115/145 (79%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 171860 GTATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGT 171919 |||||||||| ||||||||||| | ||||||||||| ||||| | || || ||| | | Sbjct 343489 GTATGCAAATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCAT 343430 Query 171920 CAGACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATC 171979 | || || || || || | || || ||||||||||||||||||||||| || |||| Sbjct 343429 CTGATACGATTGAAAATGTGAAGAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATC 343370 Query 171980 AGCAACGACTTATTTTTGCTGGTAA 172004 |||||||| | || ||||||||||| Sbjct 343369 AGCAACGATTGATATTTGCTGGTAA 343345 Score = 125 bits (138), Expect = 9e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||| ||||||||||||||||| | || || || | || Sbjct 298715 ATGCAAATTTTTGTTAAGACCCTCACTGGAAAAACTATCACTTTGGAAGTGGAACCATCC 298656 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | |||| || ||||||||||| || || |||||||| |||||| Sbjct 298655 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 298596 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | || |||||||||| Sbjct 298595 CAACGTTTGATATTTGCTGGTA 298574 Score = 125 bits (138), Expect = 9e-24 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||||||||||||||| || || | || || || | || Sbjct 325289 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACCATTACTTTGGAAGTGGAACCATCC 325230 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | |||| ||| ||||||||||| ||||| |||||||| |||||| Sbjct 325229 GACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 325170 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | || ||||| |||| Sbjct 325169 CAACGTTTGATATTTGCCGGTA 325148 Score = 123 bits (136), Expect = 3e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || |||||||||||||| ||||| | || || || ||||| Sbjct 326142 ATGCAAATTTTTGTTAAGACGCTTACTGGAAAAACCATCACTTTGGAAGTCGAACCGTCA 326083 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| || || ||||| || || |||||||| |||||| Sbjct 326082 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 326023 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | |||||||| ||||| Sbjct 326022 CAACGTTTGATTTTTGCCGGTAA 326000 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| || ||||| ||||| || || || || || || | ||| Sbjct 300537 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 300478 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||| | || || || | |||| ||| ||||| ||||| || || |||||||||||||| Sbjct 300477 GACTCCATTGAAAATGTGAAAGGCAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 300418 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| || ||||||||||||| Sbjct 300417 CAACGGCTCATTTTTGCTGGTA 300396 Score = 122 bits (134), Expect = 1e-22 Identities = 112/142 (79%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || ||||| ||||||||||||||||| | || || || | || Sbjct 325007 ATGCAAATTTTTGTTAAGACCCTCACTGGAAAAACTATCACTTTGGAAGTGGAACCATCC 324948 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 |||||||| || || | |||| || ||||||| ||| || || |||||||| |||||| Sbjct 324947 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGGTAAAGAGGGAATTCCACCAGATCAG 324888 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | || |||||||||| Sbjct 324887 CAACGTTTGATATTTGCTGGTA 324866 Score = 114 bits (126), Expect = 2e-20 Identities = 111/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || |||||||| ||||| || || | || || || ||||| Sbjct 325572 ATGCAAATTTTTGTTAAGACACTTACTGGGAAAACCATTACTTTGGAAGTCGAACCGTCA 325513 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | ||| || ||||||||||| || || |||||||| |||||| Sbjct 325512 GATACAATAGAGAATGTGAAAAGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAG 325453 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | || ||||||||||| Sbjct 325452 CAACGTTTGATATTTGCTGGTAA 325430 Score = 113 bits (124), Expect = 6e-20 Identities = 110/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 |||||||| ||||| || || |||||||| ||||| || || | || || || ||||| Sbjct 325857 ATGCAAATTTTTGTTAAGACACTTACTGGGAAAACCATTACTTTGGAAGTCGAACCGTCA 325798 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || ||||| || || | |||| ||| || || ||||| || || |||||||| |||||| Sbjct 325797 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 325738 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | |||||||| |||| Sbjct 325737 CAACGTTTGATTTTTGCCGGTA 325716 Score = 105 bits (116), Expect = 9e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || ||||| |||||||| ||||| ||||| | || || ||| | || Sbjct 299565 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAGCCATCC 299506 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || || | |||| ||| || || || || || || |||||||| |||||| Sbjct 299505 GACACTATAGAAAATGTAAAAGGCAAAATACAGGACAAAGAGGGAATTCCACCTGATCAG 299446 Query 171982 CAACGACTTATTTTTGCTGGTAA 172004 ||||| | || ||||||||||| Sbjct 299445 CAACGTTTGATATTTGCTGGTAA 299423 >seq2999 Length=368 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || ||||| |||||||| ||||| ||||| | || || ||| |||| Sbjct 43 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAGCCGTCC 102 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | |||| ||| || || ||||| || || |||||||| |||||| Sbjct 103 GATACTATAGAAAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 162 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | |||||||| |||| Sbjct 163 CAACGTTTGATTTTTGCCGGTA 184 >seq3603 Length=332 Score = 104 bits (114), Expect = 3e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || || || ||||| |||||||| ||||| ||||| | || || ||| | || Sbjct 290 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAGCCATCC 231 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 || || || || || | |||| ||| || || ||||| || || |||||||| |||||| Sbjct 230 GATACTATAGAAAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 171 Query 171982 CAACGACTTATTTTTGCTGGTA 172003 ||||| | |||||||| |||| Sbjct 170 CAACGTTTGATTTTTGCCGGTA 149 >seq72 Length=201692 Score = 100 bits (110), Expect = 4e-16 Identities = 77/90 (86%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 171963 AGGCATTCCACCCGATCAGCAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACG 172022 ||| ||||||||||||||||| ||| | ||||||||||| |||||||||||||||||||| Sbjct 49241 AGGGATTCCACCCGATCAGCAGCGATTGATTTTTGCTGGAAAACAGCTTGAAGATGGACG 49182 Query 172023 TACCCTCGCTGATTACAACGTTCA-AAAGG 172051 ||| | | |||||||| |||| ||||| Sbjct 49181 TACTTTGTCCGATTACAATATTCAGAAAGG 49152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657808175691680