Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq3603 118 2e-21 seq2999 118 2e-21 seq20 118 2e-21 >seq3603 Length=332 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 ||||||||||| || | || ||||| || || ||||| |||||||| ||||||||| | Sbjct 151 CCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 210 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| |||| ||||||||||| | ||| ||||| | ||| || ||||| || || ||| Sbjct 211 TTTACATTTTCTATAGTATCGGATGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGC 270 Query 193341 GTTTTTACAAATATTTGCAT 193360 ||||| || || || ||||| Sbjct 271 GTTTTAACGAAAATCTGCAT 290 >seq2999 Length=368 Score = 118 bits (130), Expect = 2e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 ||||||||||| || | || ||||| || || ||||| |||||||| ||||||||| | Sbjct 182 CCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 123 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| |||| ||||||||||| | ||| ||||| | ||| || ||||| || || ||| Sbjct 122 TTTACATTTTCTATAGTATCGGACGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGC 63 Query 193341 GTTTTTACAAATATTTGCAT 193360 ||||| || || || ||||| Sbjct 62 GTTTTAACGAAAATCTGCAT 43 >seq20 Length=498608 Score = 118 bits (130), Expect = 2e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || ||||| |||||||| || ||||||||||| || ||||| ||||| || ||||| Sbjct 343776 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 343835 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 |||| | |||| || || || || | ||||||||||| ||||||||||| || || Sbjct 343836 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 343895 Query 193338 AGCGTTTTTACAAATATTTGCAT 193360 || || || |||||||| ||||| Sbjct 343896 AGAGTCTTCACAAATATCTGCAT 343918 Score = 111 bits (122), Expect = 3e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || ||||| ||||| | || ||||| || || ||||||||||||||||| |||||| Sbjct 326279 TTACCAGCAAATATTAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTG 326338 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 |||||| ||| || ||||| || | || ||||| | ||| || ||||| || || Sbjct 326339 CTTTTTACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTA 326398 Query 193338 AGCGTTTTTACAAATATTTGCATT 193361 ||||| || ||||| ||||||||| Sbjct 326399 AGCGTCTTAACAAAAATTTGCATT 326422 Score = 107 bits (118), Expect = 3e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || ||||||||||| || | || ||||| || || ||||| |||||||| ||||||||| Sbjct 326000 TTACCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTG 326059 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 ||||| ||| || ||||| || | || ||||| | ||| || ||||| || || Sbjct 326060 CCTTTTACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTA 326119 Query 193338 AGCGTTTTTACAAATATTTGCATT 193361 ||||| || ||||| ||||||||| Sbjct 326120 AGCGTCTTAACAAAAATTTGCATT 326143 Score = 104 bits (114), Expect = 4e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 |||||||| ||||| | || ||||| || || ||||||||||||||||| ||||| | Sbjct 298858 CCGGCAAATATTAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTACCT 298917 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| || || ||||| | || ||||| | ||| || ||||| || || ||| Sbjct 298918 TTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTTCCAGTAAGC 298977 Query 193341 GTTTTTACAAATATTTGCAT 193360 ||||| ||||| |||||||| Sbjct 298978 GTTTTAACAAAAATTTGCAT 298997 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 |||||||| || || | || ||||| || || ||||||||||||||||| |||||| | Sbjct 325150 CCGGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 325209 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| ||| || || ||||| | || ||||| | ||| || ||||| || || || Sbjct 325210 TTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTAATGGTTTTTCCAGTAAGG 325269 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || ||||| ||||||||| Sbjct 325270 GTCTTAACAAAAATTTGCATT 325290 Score = 100 bits (110), Expect = 5e-16 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 |||| ||| || ||||| || || | || ||||| || || ||||||||||||||||| Sbjct 299134 AATTATTTACCAGCAAATATCAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTGA 299193 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 |||||| ||||| ||| || || ||||| | || || || | ||| || ||||| Sbjct 299194 ATTTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACCTCCAAAGTGATGGTTTTT 299253 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || ||||| ||||||||| Sbjct 299254 CCAGTAAGGGTCTTAACAAAAATTTGCATT 299283 Score = 100 bits (110), Expect = 5e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 ||||||||||| || | || ||||| || || ||||| |||||||| ||||||||| | Sbjct 325718 CCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 325777 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 |||| ||| || ||||| || | || ||||| | ||| || ||||| || || || Sbjct 325778 TTTACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTAAGT 325837 Query 193341 GTTTTTACAAATATTTGCAT 193360 || || ||||| |||||||| Sbjct 325838 GTCTTAACAAAAATTTGCAT 325857 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 193221 CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTT 193280 || ||||| || || | || ||||| || || ||||| ||||||||||| ||||| | Sbjct 298576 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTACCT 298635 Query 193281 TTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGC 193340 || | ||| || || ||||| | || ||||| | ||| |||||||| || || || Sbjct 298636 TTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTGAGG 298695 Query 193341 GTTTTTACAAATATTTGCATT 193361 || || ||||| ||||||||| Sbjct 298696 GTCTTAACAAAAATTTGCATT 298716 Score = 87.8 bits (96), Expect = 3e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 193218 TTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTG 193277 || || ||||| || || | || ||||| || || ||||| ||||||||||| ||||| Sbjct 325430 TTACCAGCAAATATCAAACGTTGCTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTA 325489 Query 193278 GTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTT 193337 |||| | ||| || ||||| || | || ||||| | ||| || ||||| || || Sbjct 325490 CTTTTCACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTA 325549 Query 193338 AGCGTTTTTACAAATATTTGCAT 193360 || || || ||||| |||||||| Sbjct 325550 AGTGTCTTAACAAAAATTTGCAT 325572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899580245986080