Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq20 123 4e-23 >seq20 Length=498608 Score = 123 bits (136), Expect = 4e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||||| ||||||||||| || ||||| ||||| || ||| Sbjct 343487 ATGCAAATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 343428 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| ||||| | |||||| |||||||| |||||||| || || || || Sbjct 343427 GATACGATTGAAAATGTGAAGAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 343368 Query 155943 CAAAGATTGATTTATGCCGGTAA 155965 ||| ||||||| | ||| ||||| Sbjct 343367 CAACGATTGATATTTGCTGGTAA 343345 Score = 120 bits (132), Expect = 4e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| || ||||||||||| || ||||| ||||| || ||| Sbjct 342913 ATGCAAATTTTTGTGAAAACCTTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 342854 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| ||||| | |||||| |||||||| |||||||| || || || || Sbjct 342853 GATACGATTGAAAATGTGAAGAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 342794 Query 155943 CAAAGATTGATTTATGCCGGTAAG 155966 ||| ||||||| | ||| |||||| Sbjct 342793 CAACGATTGATATTTGCTGGTAAG 342770 Score = 116 bits (128), Expect = 5e-21 Identities = 112/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| || ||||||||||| || ||||| ||||| || ||| Sbjct 343200 ATGCAAATTTTTGTGAAAACCTTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 343141 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| ||||| | |||||| |||||||| |||||||| || || || || Sbjct 343140 GATACGATTGAAAATGTGAAGAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 343081 Query 155943 CAAAGATTGATTTATGCCGGTAAG 155966 ||| | ||||| | ||| |||||| Sbjct 343080 CAACGCTTGATATTTGCTGGTAAG 343057 Score = 107 bits (118), Expect = 3e-18 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| ||| | ||||| ||||| ||||| || ||||||||| || Sbjct 325572 ATGCAAATTTTTGTTAAGACACTTACTGGGAAAACCATTACTTTGGAAGTCGAACCGTCA 325513 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || ||||||| |||||| ||||||||||| || || || || || || Sbjct 325512 GATACAATAGAGAATGTGAAAAGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAG 325453 Query 155943 CAAAGATTGATTTATGCCGGTAAG 155966 ||| | ||||| | ||| |||||| Sbjct 325452 CAACGTTTGATATTTGCTGGTAAG 325429 Score = 105 bits (116), Expect = 1e-17 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || | |||||||||||||| ||| ||||||| ||| || Sbjct 343918 ATGCAGATATTTGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 343859 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||| || |||| |||||| || ||||| |||||||| ||||| || || Sbjct 343858 GACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 343799 Query 155943 CAAAGATTGATTTATGCCGGTAA 155965 |||||||| || | ||| ||||| Sbjct 343798 CAAAGATTAATCTTTGCAGGTAA 343776 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| | ||||||||||| || || || ||||| ||| || Sbjct 298997 ATGCAAATTTTTGTTAAAACGCTTACTGGAAAAACCATCACTTTGGAAGTGGAACCATCC 298938 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || || |||||| |||||| |||||||||||||| || || ||||| || Sbjct 298937 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 298878 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAG 155969 ||| | || || | |||||||| |||| Sbjct 298877 CAACGTTTAATATTTGCCGGTATGCAG 298851 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | ||||||||||| || || || ||||||||| || Sbjct 326143 AATGCAAATTTTTGTTAAGACGCTTACTGGAAAAACCATCACTTTGGAAGTCGAACCGTC 326084 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || || || ||| |||||||| |||||||| || || || ||||| || Sbjct 326083 AGATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCA 326024 Query 155942 ACAAAGATTGATTTATGCCGGTAAG 155966 ||| | ||||||| |||||||||| Sbjct 326023 GCAACGTTTGATTTTTGCCGGTAAG 325999 Score = 100 bits (110), Expect = 4e-16 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | ||||||||||| ||||| || ||||| ||| || Sbjct 325290 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACCATTACTTTGGAAGTGGAACCATC 325231 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || || || ||| ||||| |||||||||||||| || || ||||| || Sbjct 325230 CGACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 325171 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAG 155969 ||| | ||||| | |||||||| |||| Sbjct 325170 GCAACGTTTGATATTTGCCGGTATGCAG 325143 Score = 96.9 bits (106), Expect = 5e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | |||||||||||||| || || ||||| ||| || Sbjct 298716 AATGCAAATTTTTGTTAAGACCCTCACTGGAAAAACTATCACTTTGGAAGTGGAACCATC 298657 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || || |||||| |||||| ||||||||||| || || || ||||| || Sbjct 298656 CGACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 298597 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| | ||||| | ||| |||| Sbjct 298596 GCAACGTTTGATATTTGCTGGTA 298574 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || ||||| |||||||| |||||| | ||||| || || Sbjct 300196 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 300137 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| |||| ||| || ||||| ||||||||||| || ||||| || Sbjct 300136 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAG 300077 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 || | | |||| ||| |||| Sbjct 300076 CAGCGGCTTATTTTTGCTGGTA 300055 Score = 95.1 bits (104), Expect = 2e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || ||||| |||||||| |||||| | ||||| || || Sbjct 327050 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 326991 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| |||| ||| || ||||| ||||||||||| || ||||| || Sbjct 326990 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAG 326931 Query 155943 CAAAGATTGATTTATGCCGGTA 155964 || | | |||| ||| |||| Sbjct 326930 CAGCGGCTTATTTTTGCTGGTA 326909 Score = 93.3 bits (102), Expect = 6e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | ||||||||||| || || || ||||||||| || Sbjct 326422 AATGCAAATTTTTGTTAAGACGCTTACTGGAAAAACCATCACTTTGGAAGTCGAACCGTC 326363 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 |||| || || || |||| ||||| |||||||||||||| || || || || || Sbjct 326362 AGATACAATAGAGAATGTAAAAAGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCA 326303 Query 155942 ACAAAGATTGATTTATGCCGGTAA 155965 ||| | || || | ||| ||||| Sbjct 326302 GCAACGTTTAATATTTGCTGGTAA 326279 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| |||| || | |||||||||||||| || || ||||| ||| || Sbjct 325008 AATGCAAATTTTTGTTAAGACCCTCACTGGAAAAACTATCACTTTGGAAGTGGAACCATC 324949 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | || || |||||| |||||| |||| |||||| || || || ||||| || Sbjct 324948 CGACACAATAGAGAATGTGAAAGGTAAAATTCAAGGTAAAGAGGGAATTCCACCAGATCA 324889 Query 155942 ACAAAGATTGATTTATGCCGGTA 155964 ||| | ||||| | ||| |||| Sbjct 324888 GCAACGTTTGATATTTGCTGGTA 324866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731811675450400