Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq20 113 4e-20 seq3603 104 2e-17 seq2999 100 3e-16 seq68 95.1 1e-14 >seq20 Length=498608 Score = 113 bits (124), Expect = 4e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || ||||| ||||| | ||||| ||| | || Sbjct 325289 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACCATTACTTTGGAAGTGGAACCATCC 325230 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||| | |||||| || || ||||| ||||||||||| || || ||||| Sbjct 325229 GACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 325170 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||||||||| |||||||| Sbjct 325169 CAACGTTTGATATTTGCCGG 325150 Score = 109 bits (120), Expect = 5e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||||||||| || || ||||| || || | ||||| ||| | || Sbjct 298997 ATGCAAATTTTTGTTAAAACGCTTACTGGAAAAACCATCACTTTGGAAGTGGAACCATCC 298938 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||| | || ||| || || ||||| ||||||||||| || || ||||| Sbjct 298937 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 298878 Query 24824 CAACGTTTGATCTTTGCCGG 24843 |||||||| || |||||||| Sbjct 298877 CAACGTTTAATATTTGCCGG 298858 Score = 109 bits (120), Expect = 5e-19 Identities = 112/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 |||||||| || |||||||||| || || ||||| || || | ||||| || |||| | Sbjct 299565 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGA-GCCATC 299507 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 |||||| |||||| |||||| || || || |||||||| ||||| || || ||||| Sbjct 299506 CGACACTATAGAAAATGTAAAAGGCAAAATACAGGACAAAGAGGGAATTCCACCTGATCA 299447 Query 24823 ACAACGTTTGATCTTTGCCGGGAA 24846 ||||||||||| ||||| || || Sbjct 299446 GCAACGTTTGATATTTGCTGGTAA 299423 Score = 102 bits (112), Expect = 7e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || ||||| || || | || || ||| | || Sbjct 299282 ATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACCATCACTTTGGAGGTGGAACCATCC 299223 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||| | |||||| || || ||||| ||||||||||| || || ||||| Sbjct 299222 GACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAG 299163 Query 24824 CAACGTTTGATCTTTGCCGGGAAA 24847 ||||||||||| ||||| || ||| Sbjct 299162 CAACGTTTGATATTTGCTGGTAAA 299139 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || |||||||| || | ||||| ||| | || Sbjct 298715 ATGCAAATTTTTGTTAAGACCCTCACTGGAAAAACTATCACTTTGGAAGTGGAACCATCC 298656 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||| | || ||| || || ||||| ||||| ||||| || || ||||| Sbjct 298655 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCAGATCAG 298596 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||||||||| ||||| || Sbjct 298595 CAACGTTTGATATTTGCTGG 298576 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| ||||| || || ||||| || || | ||||| ||| | | Sbjct 326142 ATGCAAATTTTTGTTAAGACGCTTACTGGAAAAACCATCACTTTGGAAGTCGAACCGTCA 326083 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||| | |||||| || || || || ||||| ||||| || || ||||| Sbjct 326082 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 326023 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||||||||| |||||||| || Sbjct 326022 CAACGTTTGATTTTTGCCGGTAA 326000 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| ||||| || || ||||| || || | ||||| ||| | | Sbjct 326421 ATGCAAATTTTTGTTAAGACGCTTACTGGAAAAACCATCACTTTGGAAGTCGAACCGTCA 326362 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||| | |||||| || || ||||| ||||||||||| || || ||||| Sbjct 326361 GATACAATAGAGAATGTAAAAAGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAG 326302 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 |||||||| || ||||| || || Sbjct 326301 CAACGTTTAATATTTGCTGGTAA 326279 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || |||||||| || | ||||| ||| | || Sbjct 325007 ATGCAAATTTTTGTTAAGACCCTCACTGGAAAAACTATCACTTTGGAAGTGGAACCATCC 324948 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| |||| | || ||| || || |||| ||||| ||||| || || ||||| Sbjct 324947 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGGTAAAGAGGGAATTCCACCAGATCAG 324888 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||||||||| ||||| || Sbjct 324887 CAACGTTTGATATTTGCTGG 324868 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || ||||| ||||| | ||||| ||| | | Sbjct 325857 ATGCAAATTTTTGTTAAGACACTTACTGGGAAAACCATTACTTTGGAAGTCGAACCGTCA 325798 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||| | |||||| || || || || ||||| ||||| || || ||||| Sbjct 325797 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 325738 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||||||||| |||||||| Sbjct 325737 CAACGTTTGATTTTTGCCGG 325718 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || ||||| ||||| || ||||| ||| || | Sbjct 300537 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCA 300478 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | |||| || ||| || || || || ||||| ||||| || ||||||||| Sbjct 300477 GACTCCATTGAAAATGTGAAAGGCAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAA 300418 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||| | || ||||| || Sbjct 300417 CAACGGCTCATTTTTGCTGG 300398 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || ||| |||| || || || || ||||| ||||| | ||||| ||| | | Sbjct 325572 ATGCAAATTTTTGTTAAGACACTTACTGGGAAAACCATTACTTTGGAAGTCGAACCGTCA 325513 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || ||| |||| | || ||| || || ||||| ||||| ||||| || || ||||| Sbjct 325512 GATACAATAGAGAATGTGAAAAGTAAAATTCAAGATAAAGAGGGAATTCCACCGGATCAG 325453 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 ||||||||||| ||||| || || Sbjct 325452 CAACGTTTGATATTTGCTGGTAA 325430 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || ||| | || || ||||| ||||| || ||||| || | | Sbjct 300197 GATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTC 300138 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| | || | |||||| ||||| |||||||||||||| || || || ||||| Sbjct 300137 AGATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCA 300078 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 || || | || ||||| || Sbjct 300077 GCAGCGGCTTATTTTTGCTGG 300057 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| ||| | || ||| | || || ||||| ||||| || ||||| || | | Sbjct 327051 GATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTC 326992 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || ||| | || | |||||| ||||| |||||||||||||| || || || ||||| Sbjct 326991 AGATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCA 326932 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 || || | || ||||| || Sbjct 326931 GCAGCGGCTTATTTTTGCTGG 326911 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | ||||| || || || ||||| ||||| || ||||| ||| | | Sbjct 327391 ATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCTTCA 327332 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 |||||| | |||| || || || || || || || || ||||| || ||||||||| Sbjct 327331 GACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAGGAGGGAATTCCACCCGATCAA 327272 Query 24824 CAACGTTTGATCTTTGCCGGGAA 24846 || || | || ||||| || || Sbjct 327271 CAGCGACTCATTTTTGCTGGTAA 327249 >seq3603 Length=332 Score = 104 bits (114), Expect = 2e-17 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 |||||||| || |||||||||| || || ||||| || || | ||||| || |||| | Sbjct 290 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGA-GCCATC 232 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||| || |||||| |||||| || || || || ||||| ||||| || || ||||| Sbjct 231 CGATACTATAGAAAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCA 172 Query 24823 ACAACGTTTGATCTTTGCCGG 24843 ||||||||||| |||||||| Sbjct 171 GCAACGTTTGATTTTTGCCGG 151 >seq2999 Length=368 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || |||||||||| || || ||||| || || | ||||| || | || Sbjct 43 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAGCCGTCC 102 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || |||||| |||||| || || || || ||||| ||||| || || ||||| Sbjct 103 GATACTATAGAAAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 162 Query 24824 CAACGTTTGATCTTTGCCGG 24843 ||||||||||| |||||||| Sbjct 163 CAACGTTTGATTTTTGCCGG 182 >seq68 Length=215320 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 139358 GACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACA 139417 |||| | || ||||||||| || ||||| | |||| || | | |||| ||||||||| Sbjct 29410 GACATTCGTGAGGACACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAACA 29351 Query 139418 GATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGT 139477 |||| || ||||| | ||| | | |||||| | || | || ||||| || ||| Sbjct 29350 GATCGGGTATCCAAAGGGCGTAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCTGTGT 29291 Query 139478 TACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATA 139529 | |||| || ||| |||||||| | ||| |||||||| ||||||| ||| Sbjct 29290 TCTTTTTCGCGTCAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 29239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449860517190320