Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq20 107 3e-18 seq3603 87.8 3e-12 seq2999 87.8 3e-12 >seq20 Length=498608 Score = 107 bits (118), Expect = 3e-18 Identities = 109/142 (77%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||||||||| ||||||||||| || | || ||||| | | Sbjct 343486 TGCAAATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 343427 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| || | |||||| ||| ||| ||||||||||| || ||||| | Sbjct 343426 ATACGATTGAAAATGTGAAGAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAGC 343367 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || || | || ||||| ||||| Sbjct 343366 AACGATTGATATTTGCTGGTAA 343345 Score = 104 bits (114), Expect = 4e-17 Identities = 108/142 (76%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| ||||| ||||||||||| || | || ||||| | | Sbjct 342912 TGCAAATTTTTGTGAAAACCTTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 342853 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| || | |||||| ||| ||| ||||||||||| || ||||| | Sbjct 342852 ATACGATTGAAAATGTGAAGAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAGC 342793 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || || | || ||||| ||||| Sbjct 342792 AACGATTGATATTTGCTGGTAA 342771 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | || || ||||| |||||| | || || |||| | | Sbjct 327390 TGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCTTCAG 327331 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | || ||| ||||||| || |||||| || ||| || || |||||||||||||||| Sbjct 327330 ACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAGGAGGGAATTCCACCCGATCAAC 327271 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 | ||||||||||||| ||||| Sbjct 327270 AGCGACTCATTTTTGCTGGTAA 327249 Score = 98.7 bits (108), Expect = 2e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | ||||| ||||| ||||||||||| || | || ||||| | | Sbjct 343199 TGCAAATTTTTGTGAAAACCTTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCTG 343140 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| ||||||| || | |||||| ||| ||| ||||||||||| || ||||| | Sbjct 343139 ATACGATTGAAAATGTGAAGAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAGC 343080 Query 146152 AAAGACTCATTTTTGCAGGTAA 146173 || | | || ||||| ||||| Sbjct 343079 AACGCTTGATATTTGCTGGTAA 343058 Score = 93.3 bits (102), Expect = 7e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || || ||||||||||| ||||| |||| || || | | Sbjct 300195 TGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 300136 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || ||||||| ||| || ||| ||||||||||| ||||| ||||| | Sbjct 300135 ATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAGC 300076 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | || |||||||| |||| Sbjct 300075 AGCGGCTTATTTTTGCTGGTA 300055 Score = 93.3 bits (102), Expect = 7e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | ||||| | || || ||||| |||||| | || || |||| | Sbjct 300536 TGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTCAG 300477 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | | ||| ||||||| ||| ||||| || |||||| || |||||||||||||||| Sbjct 300476 ACTCCATTGAAAATGTGAAAGGCAAAATTCAGGATAAAGAGGGAATTCCACCCGATCAAC 300417 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 || | ||||||||||| |||| Sbjct 300416 AACGGCTCATTTTTGCTGGTA 300396 Score = 93.3 bits (102), Expect = 7e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| ||||| | || || || ||||||||||| ||||| |||| || || | | Sbjct 327049 TGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAG 326990 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 |||| ||| | || ||||||| ||| || ||| ||||||||||| ||||| ||||| | Sbjct 326989 ATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAGC 326930 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 | | || |||||||| |||| Sbjct 326929 AGCGGCTTATTTTTGCTGGTA 326909 Score = 89.7 bits (98), Expect = 8e-13 Identities = 107/143 (75%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAAC-ATAAC 146090 |||| ||||| | || || | || |||||||| || || | || || |||| || | Sbjct 343917 TGCAGATATTTGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA- 343859 Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || || ||||||| |||| |||||| || ||| ||||||||||| || ||||| Sbjct 343858 GACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 343799 Query 146151 CAAAGACTCATTTTTGCAGGTAA 146173 |||||| | || ||||||||||| Sbjct 343798 CAAAGATTAATCTTTGCAGGTAA 343776 >seq3603 Length=332 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| | || || ||||| || ||| | || || || | || Sbjct 289 TGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAGCCATCCG 230 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| ||||||||||| |||||||| |||||| || |||||||| ||||| | Sbjct 229 ATACTATAGAAAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAGC 170 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 || | | |||||||| |||| Sbjct 169 AACGTTTGATTTTTGCCGGTA 149 >seq2999 Length=368 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || ||| | ||||| | || || ||||| || ||| | || || || | || Sbjct 44 TGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAGCCGTCCG 103 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 ||||||| ||||||||||| |||||||| |||||| || |||||||| ||||| | Sbjct 104 ATACTATAGAAAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAGC 163 Query 146152 AAAGACTCATTTTTGCAGGTA 146172 || | | |||||||| |||| Sbjct 164 AACGTTTGATTTTTGCCGGTA 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786101600234480