Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq20 123 2e-23 >seq20 Length=498608 Score = 123 bits (136), Expect = 2e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| ||||||| | ||||||||| || ||||| ||||||||||| |||| ||| Sbjct 299423 TTACCAGCAAATATCAAACGTTGCTGATCAGGTGGAATTCCCTCTTTGTCCTGTATTTTG 299482 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||| ||| |||||| |||||| || | || ||||| | ||| || ||||| ||||| Sbjct 299483 CCTTTTACATTTTCTATAGTGTCGGATGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTA 299542 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | |||||||| || |||||||| Sbjct 299543 AGCGTTTTAACGAAAATCTGCAT 299565 Score = 118 bits (130), Expect = 8e-22 Identities = 114/144 (79%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| ||||||||| ||||||||| |||||||| || || || ||||| |||||| Sbjct 342771 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTG-AATTTT 342829 Query 29704 TGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | || ||| |||| | || ||||| | |||||||| | || || ||||| ||||| Sbjct 342830 ACTCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGT 342889 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| ||||| || ||||| Sbjct 342890 TAAGGTTTTCACAAAAATTTGCAT 342913 Score = 114 bits (126), Expect = 1e-20 Identities = 114/148 (77%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 29640 TTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAA 29699 || ||| |||||| ||||||| | |||||||||||| ||||| || ||||| ||||| | Sbjct 299136 TTATTTACCAGCAAATATCAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTGAAT 299195 Query 29700 TTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCC 29759 ||| ||| ||| | |||| ||||| || |||| || || | ||| || ||||| || Sbjct 299196 TTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACCTCCAAAGTGATGGTTTTTCC 299255 Query 29760 AGTTAAGGTTTTAACAAATATCTGCATT 29787 ||| | ||| |||||||| || |||||| Sbjct 299256 AGTAAGGGTCTTAACAAAAATTTGCATT 299283 Score = 113 bits (124), Expect = 3e-20 Identities = 113/144 (78%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| ||||||| | ||||||||| |||||||| || || || ||||| |||||| Sbjct 343058 TTACCAGCAAATATCAAGCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTG-AATTTT 343116 Query 29704 TGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGT 29762 | || ||| |||| | || ||||| | |||||||| | || || ||||| ||||| Sbjct 343117 ACTCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGT 343176 Query 29763 TAAGGTTTTAACAAATATCTGCAT 29786 ||||||||| ||||| || ||||| Sbjct 343177 TAAGGTTTTCACAAAAATTTGCAT 343200 Score = 109 bits (120), Expect = 4e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| ||||||| | |||||||||||| ||||| |||||||| ||||| | ||| Sbjct 325430 TTACCAGCAAATATCAAACGTTGCTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTA 325489 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||| ||| | |||| || || || |||| ||||| | ||| || ||||| ||||| Sbjct 325490 CTTTTCACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTA 325549 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | || |||||||| || ||||| Sbjct 325550 AGTGTCTTAACAAAAATTTGCAT 325572 Score = 105 bits (116), Expect = 5e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || || ||| | || |||||||||||||| || ||||| || || || || || | ||| Sbjct 343776 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 343835 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||| ||| |||| | ||||| || |||| ||||| || ||||||||||| ||||| Sbjct 343836 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 343895 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 | || || |||||||||||||| Sbjct 343896 AGAGTCTTCACAAATATCTGCAT 343918 Score = 102 bits (112), Expect = 6e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| |||| || | |||||||||||| ||||| || ||||| ||||| | ||| Sbjct 326279 TTACCAGCAAATATTAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTG 326338 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 ||| ||| | |||| || || || |||| ||||| | ||| || ||||| ||||| Sbjct 326339 CTTTTTACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTA 326398 Query 29764 AAGGTTTTAACAAATATCTGCATT 29787 | || |||||||| || |||||| Sbjct 326399 AGCGTCTTAACAAAAATTTGCATT 326422 Score = 102 bits (112), Expect = 6e-17 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 || |||||| | || | || || ||||| || ||||| ||||| || || || | ||| Sbjct 327249 TTACCAGCAAAAATGAGTCGCTGTTGATCGGGTGGAATTCCCTCCTTATCCTGAATTTTA 327308 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || ||| |||| | ||||| ||| |||| ||||| ||||| || ||||| ||||| Sbjct 327309 CCCTTCACATTTTCAATTGTGTCTGAAGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 327368 Query 29764 AAGGTTTTAACAAATATCTGCATTTT 29789 | ||||| ||||||||||||||||| Sbjct 327369 AGAGTTTTCACAAATATCTGCATTTT 327394 Score = 100 bits (110), Expect = 2e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 || ||| |||| || | ||||||||| || ||||| || ||||| ||||| | ||| | Sbjct 298858 CCGGCAAATATTAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTACCT 298917 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || ||| | |||| ||||| || |||| ||||| | ||| || ||||| ||||| | Sbjct 298918 TTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTTCCAGTAAGC 298977 Query 29767 GTTTTAACAAATATCTGCAT 29786 ||||||||||| || ||||| Sbjct 298978 GTTTTAACAAAAATTTGCAT 298997 Score = 100 bits (110), Expect = 2e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 29647 CCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGT 29706 |||||| | || | | ||| ||||| || ||||| |||||||| || || | ||| | Sbjct 300398 CCAGCAAAAATGAGCCGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTGCCT 300457 Query 29707 TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAG 29766 || ||| |||| | | ||| || |||| ||||| ||||| || ||||| ||||| | Sbjct 300458 TTCACATTTTCAATGGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTGAGA 300517 Query 29767 GTTTTAACAAATATCTGCATTTT 29789 ||||| ||||||||||||||||| Sbjct 300518 GTTTTCACAAATATCTGCATTTT 300540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385188242099754