Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq4 318 4e-81 seq150 172 4e-37 seq113 104 2e-16 >seq4 Length=942137 Score = 318 bits (352), Expect = 4e-81 Identities = 491/701 (70%), Gaps = 0/701 (0%) Strand=Plus/Minus Query 282180 TTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTA 282239 |||| | ||||| || || || ||||| ||||| | ||| | || | |||| | | Sbjct 536031 TTACCATGCGATTGTCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTAGACTTGA 535972 Query 282240 CTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATAT 282299 ||| || | ||||| || | | ||||| || |||||| || |||||||| | | Sbjct 535971 CTTCAAAGATACCATCCTCGATTGTCAAAATAGACACATCAAATGTACCACCACCAAGGT 535912 Query 282300 CAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAG 282359 |||| || || ||||| ||| | ||| ||||||| ||||| |||| |||| Sbjct 535911 CAAATATCAGAACATTTCGTTCGCCACCACCCTTTCTATCAAGTCCATAAGCAATTGCAG 535852 Query 282360 CAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTT 282419 | || |||||||| || || || | |||||| || | ||||| ||| |||| || |||| Sbjct 535851 CCGCTGTTGGTTCGTTGATGATACGCAAAACGTTCAAACCAGAAATCGTTCCAGCGTCTT 535792 Query 282420 TAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTA 282479 | || || || | || ||||||||||||||||| ||||||||||| ||||| || | | Sbjct 535791 TGGTCGCCTGACGCTGAGAATCGTTAAAATATGCTGGAACAGTAATTACGGCGTCCTTAA 535732 Query 282480 CTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAA 282539 | |||||| | |||||| || |||| ||||| || ||| | ||| | | Sbjct 535731 CAGTTTTTCCCAAATAAGCTTCGGCAGTTTCCTTCATCTTCACTAACACCATAGCGCTGA 535672 Query 282540 TTTGTTCTGGAGAATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTAT 282599 ||| ||| || | | || ||| | || | ||| |||| || | ||||| Sbjct 535671 TTTCTTCCGGTGTAAATGACTTCGTCTCGCCCTTGTATTCGACTTGAATTTTAGGTTTCG 535612 Query 282600 TACCAACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCAT 282659 | ||| |||| ||||||||||| ||||||| |||||| || || || ||| ||||| Sbjct 535611 TTCCATCATTGATAACTTTAAACGGCCAATGTTTCATGTCAGACTGCACAGCAGCGTCAT 535552 Query 282660 TAAAATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAG 282719 | | | ||| || | ||| || |||||||||| ||||| ||||| | ||| Sbjct 535551 CATATCGACGACCGATAAGTCGCTTCGCATCAAAAACTGTATTATGAGGATTCAACGCAA 535492 Query 282720 CTTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATG 282779 | |||| || || ||||| |||||||| |||| || || || || | |||||| || Sbjct 535491 CCTGATTCTTCGCCGCATCGCCAATCAGTCGTTCGGTATCGGTGAAAGCAACATAACTTG 535432 Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839 | || |||||||| |||||||| || |||||||||||||||||||||| || | || | Sbjct 535431 GCGTGGTGCGATTCCCTTGATCGTTTGCAATAATTTCAACTTTACCATGCTGGAACACGC 535372 Query 282840 CTACACAACTAAAAGTTGTTCCTAAATCAATACCAATAGCA 282880 | |||||||| | || || || |||||||| ||||||||| Sbjct 535371 CAACACAACTGTAGGTAGTACCCAAATCAATTCCAATAGCA 535331 Score = 123 bits (136), Expect = 2e-22 Identities = 198/282 (70%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 281771 ATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 281830 ||| | || ||||| || |||||||| |||||||| | ||| || |||| ||| ||| Sbjct 536497 ATACCTGCTCCATACGCGACAGCTTCGTCAGGATTGATGCTTTTGTTAAGTTCTTTCCCA 536438 Query 281831 TTGAAAAAAT-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 281889 |||||||||| ||| || || || | || |||||||| |||| ||||| || || || Sbjct 536437 TTGAAAAAATCTTGCAACAA-TTTTTGAACTTTAGGAATGCGAGTAGATCCACCCACCAA 536379 Query 281890 TACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGG 281949 |||| |||||| | | || ||| || | ||| | ||| | | ||||||| || || Sbjct 536378 AACAACTTCATGAATCACTGCTTTGTCTAATTTCGCATCACGAAGAGCTTTTTCTACTGG 536319 Query 281950 TTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGT 282009 ||| | | || | |||||||| | | |||||||| || ||||| |||| || Sbjct 536318 TTCCAAAGTAGAACGGAACAAGTCAGCATTCAGTTCTTCAAAGCGAGCTCGCGTAATTGT 536259 Query 282010 GACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAAT 282051 | | ||||||| |||||| | | | ||||| |||||| Sbjct 536258 GGTGTAGAAATCAATGCCTTCGTAGAGACTATCAATTTCAAT 536217 >seq150 Length=99316 Score = 172 bits (190), Expect = 4e-37 Identities = 351/513 (68%), Gaps = 20/513 (4%) Strand=Plus/Minus Query 282368 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 282427 |||||||| || |||| | ||||||||||||||||| | || |||||||| || ||| Sbjct 48210 GGTTCATTGATGATTCGAACTACATTAAGACCAGCAATGGTGCCCGCATCTTTGGTAGCT 48151 Query 282428 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTT 282487 || | ||||| |||||| ||||| |||||||| || | ||||||| | | |||||||| Sbjct 48150 TGACGTTGTGCATCGTTGAAATAAGCAGGAACCGTGACGACGGCATTTTTCACTTCTTTG 48091 Query 282488 CCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCT 282547 || | |||||| || ||| ||||||||| |||| ||| | |||||||| ||| Sbjct 48090 CCCAAATAAGCTTCGGCAATTTCTTTCATTTTCAACAAAACCATCGCTGAAATTTCTTCG 48031 Query 282548 GGAG---AATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCA 282604 |||| | ||| ||| |||| | | | || || | || || || | Sbjct 48030 GGAGTGAACAATTTCTT---TTCACCGCTAACAGTGAGTTGAACGTTCGGCTTGTT--CG 47976 Query 282605 ACATTAATA--ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAA 282662 | || || ||| |||||||||| ||| ||| | ||||| ||| | ||| Sbjct 47975 ATTTTTCTAACACTGTAAATGGCCACATTTTACGATCCGCTTGAAGACTCTTGTCCGACC 47916 Query 282663 AATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG-CAGCT 282721 | |||| ||||| | || || ||||| || | ||||| ||||| | || | Sbjct 47915 ATTCTCGACCAACCATACGCTTAGCATCGAATACCGTATTCTCAGGATTGGTGGTCAAC- 47857 Query 282722 TGATATTTGGCTGCATCTCCAATCAGATGTT---CTGTCTCTGTAAATGAAACATATGAT 282778 |||| ||| || ||||| ||||||||| | | || | |||||| | ||||| || Sbjct 47856 TGATTTTTCGCGGCATCGCCAATCAGACGCTCACCTTCCGGTGTAAAAGCTACATACGAC 47797 Query 282779 GGAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACA 282838 ||||| | ||||| || |||||||| |||||||||||||| |||||| | | || Sbjct 47796 GGAGTAATACGATTGCCCTGATCATTGGCAATAATTTCAACACGACCATTCTTGAAAACT 47737 Query 282839 CCTACACAACTAAAAGTTGTTCCTAAATCAATA 282871 || || ||||||| || || | | |||||| Sbjct 47736 CCAAC---ACTAAAAATTATT--TTATTCAATA 47709 >seq113 Length=135743 Score = 104 bits (114), Expect = 2e-16 Identities = 124/168 (74%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 607617 TATTTGTGTGGTACTGATGAATATGGAACTACAACAATGATTAGAGCTCGTAAGGAAGGT 607676 ||| | |||||||| ||||||||||| ||| | ||| || | |||| | | |||||| Sbjct 59976 TATATTTGTGGTACAGATGAATATGGCACTGCCACAGAGACAAAAGCTATTGAAGAAGGT 60035 Query 607677 GTAACTTGTCGTGAACTTTGTGATAAGTATTTTGAGTTACACAAAAAAGTTTATGATTGG 607736 || ||| | | | || |||||||| |||| ||| || || |||||||||| ||| Sbjct 60036 GTGACTCCTATTCAGCTCTGTGATAAATATTATGAATTGCATCGCGAAGTTTATGAATGG 60095 Query 607737 TTTAATATTGAATTTGATGTTTTTGGTAGAACATCTACAACAAAACAG 607784 |||||||| |||||||| ||||||| | | | |||||| ||||| Sbjct 60096 TTTAATATAAAATTTGATTATTTTGGTCGCA---CGACAACAGAACAG 60140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740306662466244