Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq156 86.0 1e-11 >seq156 Length=94912 Score = 86.0 bits (94), Expect = 1e-11 Identities = 190/283 (67%), Gaps = 3/283 (1%) Strand=Plus/Plus Query 143020 TAGAACTTAGGAGATGGGCGGATGTTTTTCTTATAGCGCCCTTAACGGCAAATACGTTAG 143079 || |||| ||| ||||||| || |||| | || ||||| || |||||| || | | Sbjct 49501 TACAACTAAGGCGATGGGCAGACATTTTAGTGATTGCGCCATTGGACGCAAATTCGATGG 49560 Query 143080 CAAAAATAGCCAACGGTATATGCGATAATTTACTAACATCTATAGTAAGAGCCTGGGATA 143139 | |||||| ||| || || || |||||||| ||||| | | || ||||| |||||| Sbjct 49561 CGAAAATATCCAGTGGAATTTGTGATAATTTGTTAACAAGTTTGGTTAGAGCTTGGGATT 49620 Query 143140 TAAATAAACCTCTTATTTTTTGTCCCGCTATGAATAGCCTTATGTGGGAACATCCTATTA 143199 ||||| | | | |||||||| ||||||| | ||||||||||| || | | Sbjct 49621 GCGCAAAACCGGTCTATATATGTCCCGCAATGAATACCTACATGTGGGAACACCCGTTAA 49680 Query 143200 CAGAAAAACATAT--AGATGCTTTAAAACAT-ATGGGTTTCATAGAAATAGAATGCATAG 143256 | | ||||| || | | ||| |||| | | || |||| ||| | ||||| | Sbjct 49681 CGTATAAACAGATGGACAAGCTGAAAAATTTGTTTGGATTCAAGGAAGTTCCTTGCATTG 49740 Query 143257 aaaaaaaaCTAGCCTGCGGAGACATAGGAAATGGTGCTATGGC 143299 | || || || ||||| ||| || ||||||| ||||| Sbjct 49741 AGAAGGAATTAATGTGCGGTGACCGTGGTTATGGTGCCATGGC 49783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903336736331840