Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq71 84.2 2e-11 >seq71 Length=204746 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 120665 CCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCT 120724 ||||||| || || |||||||||||||| || |||| || ||||| | |||| | | | Sbjct 134583 CCTCGTCACGAGAGATCAGCTCGTTGCTGAAGGTCAAACCTGGCATCAGGCCTCGCTTTT 134524 Query 120725 TGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGG 120784 | | |||| || | || ||||||||||||||||| | ||| || || || || | Sbjct 134523 TCAACCAGAAAATTGACGCGAAGCTGCCCGAAAAGAAAATGCCTTCAACAGCTGCGAACG 134464 Query 120785 CGACCATGCGCTCGGCCAACG 120805 |||||| || |||| |||| Sbjct 134463 CGACCAAACGTTCGGAGAACG 134443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483380954040560