Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq20 84.2 5e-11 >seq20 Length=498608 Score = 84.2 bits (92), Expect = 5e-11 Identities = 101/135 (75%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||||| || |||||||| |||||||||||||||||| || |||||| | || Sbjct 298982 AAAACGCTTACTGGAAAAACCATCACTTTGGAAGTGGAACCATCCGACACAATAGAGAAT 298923 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || |||| ||| |||||||| |||||||||||| || || ||| | | || || Sbjct 298922 GTGAAAGGTAAA-ATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAACGTTTAATATT 298864 Query 206304 CGCCGGAAAGCAGTT 206318 ||||| | |||||| Sbjct 298863 TGCCGGTATGCAGTT 298849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181720953131074