Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq20 120 3e-22 seq2999 100 3e-16 seq3603 95.1 1e-14 seq71 87.8 2e-12 >seq20 Length=498608 Score = 120 bits (132), Expect = 3e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| |||||||| |||||||| || || || |||||||| ||||||||||| | Sbjct 325150 CCGGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 325209 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||||||||| | |||||| || | |||||||||||| || || | Sbjct 325210 TTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTAATGGTTTTTCCAGTAAGG 325269 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||||||| Sbjct 325270 GTCTTAACAAAAATTTGCATT 325290 Score = 118 bits (130), Expect = 1e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||| || ||||| |||||||| |||||||| || || || |||||||| ||||||||||| Sbjct 299139 TTTACCAGCAAATATCAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTT 299198 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 ||| || || | ||||||||| | |||||| || | ||| |||||||| || || Sbjct 299199 GCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACCTCCAAAGTGATGGTTTTTCCAGT 299258 Query 134690 TAAAGTTTTAACGAAAATTTGCATT 134714 | || ||||| |||||||||||| Sbjct 299259 AAGGGTCTTAACAAAAATTTGCATT 299283 Score = 113 bits (124), Expect = 5e-20 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| || ||||| |||||||| || || || |||||||| ||||||||||| | Sbjct 298858 CCGGCAAATATTAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTACCT 298917 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||||||||| | |||||| || | ||| |||||||| || || | Sbjct 298918 TTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTTCCAGTAAGC 298977 Query 134694 GTTTTAACGAAAATTTGCAT 134713 |||||||| ||||||||||| Sbjct 298978 GTTTTAACAAAAATTTGCAT 298997 Score = 105 bits (116), Expect = 7e-18 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| |||||||| |||||||| || || || || ||||| ||||||||||| | Sbjct 298576 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTACCT 298635 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||||||||| | |||||| || | ||| || ||||| || || | Sbjct 298636 TTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTGAGG 298695 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||||||| Sbjct 298696 GTCTTAACAAAAATTTGCATT 298716 Score = 105 bits (116), Expect = 7e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| |||||||| |||||||| || || || || ||||| ||||||||||| Sbjct 325430 TTACCAGCAAATATCAAACGTTGCTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTA 325489 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || |||| ||| || || | |||||||||||| || || Sbjct 325490 CTTTTCACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTA 325549 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | || ||||| ||||||||||| Sbjct 325550 AGTGTCTTAACAAAAATTTGCAT 325572 Score = 102 bits (112), Expect = 8e-17 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || ||||| |||||||| |||||||| || || || || ||||| |||||||||| | Sbjct 324868 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTACCTTGAATTTTACCT 324927 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||||||||| | |||||| || | ||| || ||||| || || | Sbjct 324928 TTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTGAGG 324987 Query 134694 GTTTTAACGAAAATTTGCATT 134714 || ||||| |||||||||||| Sbjct 324988 GTCTTAACAAAAATTTGCATT 325008 Score = 102 bits (112), Expect = 8e-17 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| || ||||| |||||||| || || || |||||||| ||||||||||| Sbjct 326279 TTACCAGCAAATATTAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTG 326338 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || |||| ||| || || | ||| |||||||| || || Sbjct 326339 CTTTTTACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTA 326398 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | || ||||| |||||||||||| Sbjct 326399 AGCGTCTTAACAAAAATTTGCATT 326422 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||||||| |||||||| || || || || ||||| || || ||||| | Sbjct 325718 CCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 325777 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || |||| ||| || || | |||||||||||| || || | Sbjct 325778 TTTACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTAAGT 325837 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || ||||| ||||||||||| Sbjct 325838 GTCTTAACAAAAATTTGCAT 325857 Score = 98.7 bits (108), Expect = 1e-15 Identities = 108/144 (75%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||||||||| |||||||| || || || || ||||| || || ||||| Sbjct 326000 TTACCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTG 326059 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | ||| || |||| ||| || || | ||| |||||||| || || Sbjct 326060 CCTTTTACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTA 326119 Query 134691 AAAGTTTTAACGAAAATTTGCATT 134714 | || ||||| |||||||||||| Sbjct 326120 AGCGTCTTAACAAAAATTTGCATT 326143 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| |||||||| |||||||| || || || || ||||| || || ||||| Sbjct 299423 TTACCAGCAAATATCAAACGTTGCTGATCAGGTGGAATTCCCTCTTTGTCCTGTATTTTG 299482 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 ||| || || | |||||||| | ||||| || | ||| |||||||| || || Sbjct 299483 CCTTTTACATTTTCTATAGTGTCGGATGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTA 299542 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 | |||||||||||||| ||||| Sbjct 299543 AGCGTTTTAACGAAAATCTGCAT 299565 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || |||||||| | ||||| |||||||| || || || || || || |||||||| Sbjct 327249 TTACCAGCAAAAATGAGTCGCTGTTGATCGGGTGGAATTCCCTCCTTATCCTGAATTTTA 327308 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | |||||| || | |||||| || |||||||||||||| || || Sbjct 327309 CCCTTCACATTTTCAATTGTGTCTGAAGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 327368 Query 134691 AAAGTTTTAACGAAAATTTGCATTTT 134716 | |||||| || || || |||||||| Sbjct 327369 AGAGTTTTCACAAATATCTGCATTTT 327394 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| | || || |||||||| || || || ||||| || |||||||| | Sbjct 300398 CCAGCAAAAATGAGCCGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTGCCT 300457 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | | ||| || | |||||| || |||||||||||||| || || | | Sbjct 300458 TTCACATTTTCAATGGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTGAGA 300517 Query 134694 GTTTTAACGAAAATTTGCATTTT 134716 ||||| || || || |||||||| Sbjct 300518 GTTTTCACAAATATCTGCATTTT 300540 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||| || |||||||| ||||| |||||||| || ||||||||||| Sbjct 342771 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 342830 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | || || || | || || || | || || ||||| || ||| Sbjct 342831 CTCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 342890 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||||||||| Sbjct 342891 AAGGTTTTCACAAAAATTTGCAT 342913 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||| || |||||||| ||||| |||||||| || ||||||||||| Sbjct 343058 TTACCAGCAAATATCAAGCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 343117 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | || || || | || || || | || || ||||| || ||| Sbjct 343118 CTCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 343177 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||||||||| Sbjct 343178 AAGGTTTTCACAAAAATTTGCAT 343200 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 134571 TTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTT 134630 || || ||||| ||||| || |||||||| ||||| |||||||| || ||||||||||| Sbjct 343345 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 343404 Query 134631 TGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTT 134690 || || || | || || || | || || || | || || ||||| || ||| Sbjct 343405 CTCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 343464 Query 134691 AAAGTTTTAACGAAAATTTGCAT 134713 || ||||| || ||||||||||| Sbjct 343465 AATGTTTTCACAAAAATTTGCAT 343487 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| | ||||||||||| || || ||||||||||| |||||||| || | Sbjct 300057 CCAGCAAAAATAAGCCGCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTACTT 300116 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || |||| || || || || ||||| ||||| || || || Sbjct 300117 TTTACGTTCTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 300176 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| Sbjct 300177 GTCTTCACAAATATCTGCAT 300196 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||| | ||||||||||| || || ||||||||||| |||||||| || | Sbjct 326911 CCAGCAAAAATAAGCCGCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTACTT 326970 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | ||| || |||| || || || || ||||| ||||| || || || Sbjct 326971 TTTACGTTCTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 327030 Query 134694 GTTTTAACGAAAATTTGCAT 134713 || || || || || ||||| Sbjct 327031 GTCTTCACAAATATCTGCAT 327050 >seq2999 Length=368 Score = 100 bits (110), Expect = 3e-16 Identities = 106/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||||||| |||||||| || || || || ||||| || || ||||| | Sbjct 182 CCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 123 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || ||||||| ||||| || | ||| |||||||| || || | Sbjct 122 TTTACATTTTCTATAGTATCGGACGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGC 63 Query 134694 GTTTTAACGAAAATTTGCAT 134713 |||||||||||||| ||||| Sbjct 62 GTTTTAACGAAAATCTGCAT 43 >seq3603 Length=332 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 134574 CCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGT 134633 || |||||||||||||| |||||||| || || || || ||||| || || ||||| | Sbjct 151 CCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 210 Query 134634 TTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAA 134693 || || || | || ||||| | ||||| || | ||| |||||||| || || | Sbjct 211 TTTACATTTTCTATAGTATCGGATGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGC 270 Query 134694 GTTTTAACGAAAATTTGCAT 134713 |||||||||||||| ||||| Sbjct 271 GTTTTAACGAAAATCTGCAT 290 >seq71 Length=204746 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 21743 CCTCGTCGCGCGAAATCAATTCGTTGCTGAACGTGAGACCGGGCATTAAACCTCGATTTT 21802 ||||||| || || |||| ||||||||||| || | ||| ||||| | ||||| |||| Sbjct 134583 CCTCGTCACGAGAGATCAGCTCGTTGCTGAAGGTCAAACCTGGCATCAGGCCTCGCTTTT 134524 Query 21803 TAATGTAAAAAATTGCCGCAAAGCTACCGGaaaaaaaCACGCCCTCCACAATGGCGAACG 21862 | | | ||||||| ||| ||||| || ||||| || | ||| || ||| ||||||| Sbjct 134523 TCAACCAGAAAATTGACGCGAAGCTGCCCGAAAAGAAAATGCCTTCAACAGCTGCGAACG 134464 Query 21863 CCACCA 21868 | |||| Sbjct 134463 CGACCA 134458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505356742536880