Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq68 116 5e-21 >seq68 Length=215320 Score = 116 bits (128), Expect = 5e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 68394 TGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAGACCTAGACTCCATCCGTAGAA 68453 ||| || || || | | ||||||||| || |||||||| ||| |||| |||||||| Sbjct 30898 TGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTTCAGTCCTCTCTTCCAGCCGTAGAA 30839 Query 68454 ATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTATATGAATATTCATCGATTGACT 68513 |||||| || ||||| | ||| | || ||||| || |||||||||| ||| || Sbjct 30838 ATGCATCGACGTCAGTTTAGCATAGTTGGGCTCGGCAATGTGAATATTCAACGACTGGGA 30779 Query 68514 TTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTATAATACTCTTTTGAGGAATTTC 68573 ||| || |||||||| || || || || ||||| | ||| | | ||||| | |||||| Sbjct 30778 TTGGTCAATGAAAGCACCCCTTTCGGCGGCCATGTCTATGACGCATTTTTGGGAAATTTC 30719 Query 68574 CCAAATAGTCTT 68585 ||||| ||||| Sbjct 30718 CCAAACCGTCTT 30707 Score = 105 bits (116), Expect = 9e-18 Identities = 132/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 70316 ATAAATCTTCCATTACATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGG 70375 ||||||| || || ||||| || || | |||||| ||||| ||||| ||||| | || Sbjct 28308 ATAAATCATCGATCACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGG 28249 Query 70376 CTATTCTGGCTGCTAGAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTT 70435 |||| | || || | || |||||||||||||||| |||||| ||||| | |||| Sbjct 28248 CTATGCGTGCGGCCAATATCGCATAGTCAGGATGTTTTGTAGTCATTGTAGCGGAAATTT 28189 Query 70436 CCGCAGCTAACGTATCTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTT 70495 | ||||| || | || ||||| | |||||| || || | ||| || || ||| |||| Sbjct 28188 CAGCAGCCAAATTGTCCAATTCGACAGTTGTGACACCTTGATACAGGCCGGCAATGACTT 28129 Query 70496 T 70496 | Sbjct 28128 T 28128 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 68715 TATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCAC 68774 || ||| ||||| || |||| ||| | |||||| || | ||| || |||| ||| || Sbjct 30505 TACTTGGAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTATGCTTCTAC 30446 Query 68775 AGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAA 68834 |||||||| || |||| |||||| || ||||||||||| ||||| || |||| || || Sbjct 30445 TGATTCATTGTTGCCCAAAATTTGCGCTGTTGATGCAGTCGGCATTGGAGCCAACAGCAA 30386 Query 68835 ACTATTTCTAAGACCAT 68851 ||||| ||||||| Sbjct 30385 CGAATTTCGCAGACCAT 30369 Score = 93.3 bits (102), Expect = 6e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 69315 ATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATT 69374 |||||| | || ||||| || || || |||||| ||||| |||| |||||||||||| Sbjct 29708 ATATTGCACAATTTCTGTGCAAAGGTTTGAACATTTTATAGTACCCAAATTTTGCTGATT 29649 Query 69375 ACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGA 69434 |||| | || || || || ||||| | |||||||| || ||||||||||| ||||| Sbjct 29648 CGACTTTCTATTGCACGCATCTTTGTAGACCATAAACGGCGTGCCAGTTTCAATTTGAGA 29589 Query 69435 TTCGATAAT 69443 || || || Sbjct 29588 CTCAATTAT 29580 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686852181542160