Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq71 136 3e-27 >seq71 Length=204746 Score = 136 bits (150), Expect = 3e-27 Identities = 234/334 (70%), Gaps = 13/334 (4%) Strand=Plus/Plus Query 43904 CGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCC 43963 || ||| | |||||| ||||| | | |||||||| | || ||||| || ||||||||| Sbjct 134226 CGATTTTCTCAAGAAATTCAAGTGACCGAAGCACGTTTCTTCTATGGCTTCCAAATTGCC 134285 Query 43964 ATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGG 44023 ||||||||| | ||||| || |||||||| || |||| || || |||||| ||| | Sbjct 134286 ATAGAAAATGTCCATTCCGAGATGTACAGCCTGTTGATTGACACCTACATCCGTGATCCG 134345 Query 44024 CACGAGAAGCATCGATT---GTTTAATGCGATAGAAACAGTACC-TGCGATTAAACATAA 44079 | | ||| | ||| ||| || || || ||||| | || || | | || | || Sbjct 134346 ---GTGGAGCGTGAATTTTTGTTCAACGCAATCGAAACCATTCCGTGTG-TGAAGAAAAA 134401 Query 44080 AGCAGACTGGGC----CCTTAAATGGATAAATTCAAATGATTCTTTTGGAGAACGACTTG 44135 |||||||||||| | || || | | | | ||| | | || ||||| | | Sbjct 134402 AGCAGACTGGGCTTTGCGTTGGATCGGTGACCGCCAATCA-CCGTTCTCCGAACGTTTGG 134460 Query 44136 TCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGT 44195 ||||||| |||| ||| ||||||||||||||||| || || ||| | || || |||| Sbjct 134461 TCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCGGGCAGCTTCGCGTCAATTTTCTGGT 134520 Query 44196 TAAAGAAACGAGGTTTGATGCCTGGGTTGACGTT 44229 | || || ||||| ||||||| || ||||| || Sbjct 134521 TGAAAAAGCGAGGCCTGATGCCAGGTTTGACCTT 134554 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397424058696970