Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq68 104 2e-17 seq20 95.1 1e-14 >seq68 Length=215320 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 131552 TAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTCCAAATTGGGACATTCG 131611 || |||||||| || ||||||| | | ||| || || |||| ||||||||| Sbjct 29462 TACTTTTCGTATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCTGGACATTCG 29403 Query 131612 CTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTTCATAAACAAATCCGGC 131671 |||||||| || ||||| | |||| ||||| |||||||| |||| ||| || Sbjct 29402 TGAGGACACATCAGTGACCAATCTCCGTCGGCTTCAATGCGCTTCATGAACAGATCGGGT 29343 Query 131672 ACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGTACCCATAAtttttttC 131731 | ||| | ||||| |||| |||||| ||| | || ||||| | || | | |||||| Sbjct 29342 ATCCAAAGGGCGTAAAACAAATCTCTGGCTCTGTTTTCTTCGATGCCTGTGTTCTTTTTC 29283 Query 131732 AAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATACACTGC 131781 | | ||| || || ||||| || ||||| ||||||||||| || || Sbjct 29282 GCGTCAAGAAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATAAACCGC 29233 >seq20 Length=498608 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27106 TACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGT 27165 |||| || ||||||| || |||||||| || || | ||||||||||| || ||| Sbjct 300396 TACCAGCAAAAATGAGCCGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTGC 300455 Query 27166 TTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCA 27225 ||||| |||| | | ||||| || ||| ||||| ||||| || | ||| || || | Sbjct 300456 CTTTCACATTTTCAATGGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTGA 300515 Query 27226 GAGTTTTCACAAAGATTTGCAT 27247 ||||||||||||| || ||||| Sbjct 300516 GAGTTTTCACAAATATCTGCAT 300537 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 27105 TTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTG 27164 ||||| || ||||||| ||||||||||| || || | ||||| ||||| || || Sbjct 327249 TTACCAGCAAAAATGAGTCGCTGTTGATCGGGTGGAATTCCCTCCTTATCCTGAATTTTA 327308 Query 27165 TTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTC 27224 |||| |||| | ||||||| | ||| ||||| ||||| || | ||| || || Sbjct 327309 CCCTTCACATTTTCAATTGTGTCTGAAGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 327368 Query 27225 AGAGTTTTCACAAAGATTTGCAT 27247 |||||||||||||| || ||||| Sbjct 327369 AGAGTTTTCACAAATATCTGCAT 327391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424900250412528