Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq71 87.8 6e-12 >seq71 Length=204746 Score = 87.8 bits (96), Expect = 6e-12 Identities = 95/125 (76%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 443715 GTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCTCCATCTTCTG 443774 ||||| || || | || ||||| | || ||| |||||||| || || || ||||| Sbjct 134460 GTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCGGGCAGCTTC-GCGTCAATTTTCTG 134518 Query 443775 GTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGATCAGTCGGGA 443834 |||||||||||| || || |||| ||| ||||||| || ||||| |||||| ||| || Sbjct 134519 GTTGAAAAAGCGAGGCCTGATGCCAGGTTTGACCTTCAGCAACGAGCTGATCTCTCGTGA 134578 Query 443835 CGAGG 443839 ||||| Sbjct 134579 CGAGG 134583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588201808440330