Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq71 82.4 9e-11 >seq71 Length=204746 Score = 82.4 bits (90), Expect = 9e-11 Identities = 94/124 (76%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 94814 TCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCG-CTATTTATTGG 94872 |||| || || |||||| || || ||||| || || |||| ||| | |||| ||| Sbjct 134461 TCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCGGGCAGCTTC-GCGTCAATTTTCTGG 134519 Query 94873 CTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGAC 94932 | || |||||||| || ||||||||| | |||| ||||||||| |||||||||||| Sbjct 134520 TTGAAAAAGCGAGGCCTGATGCCAGGTTTGACCTTCAGCAACGAGCTGATCTCTCGTGAC 134579 Query 94933 GAGG 94936 |||| Sbjct 134580 GAGG 134583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583212724728560