Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq4 333 8e-86 seq150 170 6e-37 seq20 141 3e-28 seq3603 118 3e-21 seq2999 113 1e-19 seq72 102 2e-16 seq29 96.9 1e-14 seq169 84.2 7e-11 >seq4 Length=942137 Score = 333 bits (368), Expect = 8e-86 Identities = 558/804 (69%), Gaps = 5/804 (1%) Strand=Plus/Plus Query 349199 GCTATAGGAATCGATTTAGGTACTACTTATTCTTGTGTTGCTGTTTGGCAAAATGATCGT 349258 ||||| ||||| ||||| |||||||| || |||||||| || | || ||| | Sbjct 535332 GCTATTGGAATTGATTTGGGTACTACCTACAGTTGTGTTGGCGTGTTCCAGCATGGTAAA 535391 Query 349259 GTAGAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACC 349318 || ||||| |||||||| |||||||| || | || |||||| || ||||| || ||| Sbjct 535392 GTTGAAATTATTGCAAACGATCAAGGGAATCGCACCACGCCAAGTTATGTTGCTTTCACC 535451 Query 349319 GAAACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAAT 349378 || || || || ||||||| ||| | || || ||||| | ||| ||||| | ||| Sbjct 535452 GATACCGAACGACTGATTGGCGATGCGGCGAAGAATCAGGTTGCGTTGAATCCTCATAAT 535511 Query 349379 ACGGTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCT 349438 || ||||||||||| ||||||||||| ||| | | | | |||| || || ||| Sbjct 535512 ACAGTTTTTGATGCGAAGCGACTTATCGGTCGTCGATATGATGACGCTGCTGTGCAGTCT 535571 Query 349439 GATCTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAG 349498 || | ||||||| || |||| ||| | || || || ||||| | ||| | Sbjct 535572 GACATGAAACATTGGCCGTTTAAAGTTATC---AATGATGGAACGAAACCTAAAATTCAA 535628 Query 349499 GTTGAATATAAAGGTGA-ACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTT 349557 || ||||| || || || || || || ||| ||| |||||||| | ||||| || Sbjct 535629 GTCGAATACAAGGGCGAGACGAAGTCA-TTTACACCGGAAGAAATCAGCGCTATGGTGTT 535687 Query 349558 AGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTAT 349617 ||| || |||||||||| ||| ||||| ||||| || |||| || | || || || || Sbjct 535688 AGTGAAGATGAAGGAAACTGCCGAAGCTTATTTGGGAAAAACTGTTAAGGACGCCGTAAT 535747 Query 349618 TACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCAT 349677 |||||| ||||| |||||||| ||| | |||||| || || ||||| ||||| | || Sbjct 535748 TACTGTTCCAGCATATTTTAACGATTCTCAGCGTCAGGCGACCAAAGACGCTGGAACGAT 535807 Query 349678 TGCGGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGG 349737 | | || || || ||| | | || || || ||||| || || || |||||||| ||||| Sbjct 535808 TTCTGGTTTGAACGTTTTGCGTATCATCAACGAACCAACAGCGGCTGCAATTGCTTATGG 535867 Query 349738 GCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 ||||||| || | ||| ||| |||| |||| || ||||| | ||||||||||| Sbjct 535868 ACTTGATAGAAAGGGTGGTGGCGAACGAAATGTTCTGATATTTGACCTTGGTGGTGGTAC 535927 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGG 349857 |||||||| || | | ||| | || || || || |||||||| || | || ||||| Sbjct 535928 ATTTGATGTGTCTATTTTGACAATCGAGGATGGTATCTTTGAAGTCAAGTCTACCGCTGG 535987 Query 349858 TGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGA 349917 ||| || || | ||||| || || || || ||||| | || ||||| || || Sbjct 535988 TGACACTCACTTGGGTGGTGAGGACTTCGACAATCGCATGGTAAATCATTTCGTGGCTGA 536047 Query 349918 ATTTAAGCGTCAAGCTAAAATTGATATTGGAGATAATCCTAGAGCAATGCGTCGCCTAAG 349977 ||||| || | || | || || | |||||| | ||| ||||||| | | Sbjct 536048 GTTTAAACGAAAGAACAAGAAAGACATGTCATCTAATCCACGCGCATTGCGTCGTTTGCG 536107 Query 349978 AACTGCGTGTGAACGTGCTAAGCG 350001 || || |||||||| || || || Sbjct 536108 CACAGCTTGTGAACGAGCGAAACG 536131 Score = 118 bits (130), Expect = 3e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 183561 AATGTTCTTTTAGCTCGTTCACATGCTGTTCTTAGTCGACGTAATGATCTTGGATTATCT 183620 || || | ||| ||||||||||| ||||| | | ||||| |||| | ||||||| | Sbjct 536137 AACGTGCGTTTCGCTCGTTCACAAGCTGTGCGCAAACGACGCAATGCGCGTGGATTAGAT 536078 Query 183621 GTAATATCTTGTTTATGTTTTCTTTTAAATTCAGTAATAAAATGTTGAAGTAATCTTGTA 183680 | || |||| || | |||| |||||| |||| | ||||| | | | | | Sbjct 536077 GACATGTCTTTCTTGTTCTTTCGTTTAAACTCAGCCACGAAATGATTTACCATGCGATTG 536018 Query 183681 TCAAAATCTTCACCACCTAAATGTGTATCGCCAGCAGTAGCTTTAACTTCAAATATTCCG 183740 || || || |||||||| || || || || ||||| |||| || |||||||| || || Sbjct 536017 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCAGCGGTAGACTTGACTTCAAAGATACCA 535958 Query 183741 TCTTCAATATTTAAAATTGATACATCAAATGTACCACCACCCAAATCAAA 183790 || || || | ||||| || |||||||||||||||||||| | ||||| Sbjct 535957 TCCTCGATTGTCAAAATAGACACATCAAATGTACCACCACCAAGGTCAAA 535908 Score = 102 bits (112), Expect = 2e-16 Identities = 190/277 (69%), Gaps = 4/277 (1%) Strand=Plus/Plus Query 350030 ATTGAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTATTACACGTGCTCGG 350089 |||||||||||| ||| || |||| ||||||| | | ||||| || ||||| Sbjct 536217 ATTGAAATTGATAGTCTCTACGAAGGCATTGATTTCTACACCACAATTACGCGAGCTCGC 536276 Query 350090 TTTGAAGAATTATGTATG--GATCTTTTTAGAGCAACAATGGATCCTGTGGAAAAAGTAT 350147 ||||||||| || ||| || | || | | || |||| || || ||||||| Sbjct 536277 TTTGAAGAA--CTGAATGCTGACTTGTTCCGTTCTACTTTGGAACCAGTAGAAAAAGCTC 536334 Query 350148 TAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGTGGTTCTA 350207 | ||||| ||| | |||| |||| ||||||| ||||| || ||||| |||| Sbjct 536335 TTCGTGATGCGAAATTAGACAAAGCAGTGATTCATGAAGTTGTTTTGGTGGGTGGATCTA 536394 Query 350208 CACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTA 350267 | || ||||| ||||||||| | || | || ||||| ||||| ||||||| | | Sbjct 536395 CTCGCATTCCTAAAGTTCAAAAATTGTTGCAAGATTTTTTCAATGGGAAAGAACTTAACA 536454 Query 350268 GATCAATTAATCCAGATGAAGCTGTTGCATATGGTGC 350304 | || ||||| || |||||||| || ||||| || Sbjct 536455 AAAGCATCAATCCTGACGAAGCTGTCGCGTATGGAGC 536491 >seq150 Length=99316 Score = 170 bits (188), Expect = 6e-37 Identities = 332/485 (68%), Gaps = 8/485 (2%) Strand=Plus/Plus Query 349233 GTGTTGCTGTTTGGCAAAATGATCGTGTAGAAATAATTGCAAATGATCAAGGTAACAGAA 349292 |||||| |||| | |||| |||||| ||||| ||||| |||||||| || || | | Sbjct 47730 GTGTTGGAGTTTTCAAGAATGGTCGTGTTGAAATTATTGCCAATGATCAGGGCAATCGTA 47789 Query 349293 CAACGCCATCATACGTTGCATTTACC---GAAACTGAGCGTATGATTGGTGATTCTGCAA 349349 || || || || || || ||||| ||| ||||||| ||||||| ||| | || | Sbjct 47790 TTACTCCGTCGTATGTAGCTTTTACACCGGAAGGTGAGCGTCTGATTGGCGATGCCGCGA 47849 Query 349350 AAAATCAAGCTG-CTGCTAATCCAAAAAATACGGTTTTTGATGCTAAGCGACTTATTGGT 349408 ||||||| | || | | ||||| | |||||||| || ||||||||||| | ||||| Sbjct 47850 AAAATCA-GTTGACCACCAATCCTGAGAATACGGTATTCGATGCTAAGCGTATGGTTGGT 47908 Query 349409 AGAAGTTTTTCTGACAAATCTACACAATCTGATCTAAAACATTTTCCTTTTACTGTTGTT 349468 || | || ||||| | ||| | |||| ||| | || ||||| || ||| Sbjct 47909 CGAGAATGGTCGGACAAGAGTCTTCAAGCGGATCGTAAAATGTGGCCATTTACAGT-GTT 47967 Query 349469 CCAAAAGACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGAACAAAAACAATTT 349528 |||| || | || || | || | | || |||||| | ||| || Sbjct 47968 AGAAAAATCGA--ACAAGCCGAACGTTCAACTCACTGTTAGCGGTGAAAAGAAATTGTTC 48025 Query 349529 TTACCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATAT 349588 ||||||||||||||| | |||||||| | |||||||| |||||||| ||||| ||| Sbjct 48026 ACTCCCGAAGAAATTTCAGCGATGGTTTTGTTGAAAATGAAAGAAATTGCCGAAGCTTAT 48085 Query 349589 TTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAG 349648 || || || ||| | |||| || | || || || || ||||| || ||||| || Sbjct 48086 TTGGGCAAAGAAGTGAAAAATGCCGTCGTCACGGTTCCTGCTTATTTCAACGATGCACAA 48145 Query 349649 CGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAAT 349708 ||| || || |||||||| |||| |||||| || | ||||| | |||| || ||| Sbjct 48146 CGTCAAGCTACCAAAGATGCGGGCACCATTGCTGGTCTTAATGTAGTTCGAATCATCAAT 48205 Query 349709 GAACC 349713 ||||| Sbjct 48206 GAACC 48210 >seq20 Length=498608 Score = 141 bits (156), Expect = 3e-28 Identities = 117/143 (82%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| Sbjct 343345 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 343404 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || ||||| ||||||| ||||||||| || ||||| | ||| | ||| ||||| ||| Sbjct 343405 CTCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 343464 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 | |||||| |||||||| ||||| Sbjct 343465 AATGTTTTCACAAAAATTTGCAT 343487 Score = 136 bits (150), Expect = 1e-26 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| Sbjct 342771 TTACCAGCAAATATCAATCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 342830 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || ||||| ||||||| ||||||||| || ||||| | ||| | ||| ||||| ||| Sbjct 342831 CTCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 342890 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 | ||||| |||||||| ||||| Sbjct 342891 AAGGTTTTCACAAAAATTTGCAT 342913 Score = 136 bits (150), Expect = 1e-26 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||||||||||| ||||| ||||| ||||| ||||||||| Sbjct 343058 TTACCAGCAAATATCAAGCGTTGCTGATCAGGCGGAATGCCTTCCTTATCTTGAATTTTA 343117 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 || ||||| ||||||| ||||||||| || ||||| | ||| | ||| ||||| ||| Sbjct 343118 CTCTTCACATTTTCAATCGTATCAGATGGCTCTACTTCCAATGTGATTGTTTTTCCAGTT 343177 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 | ||||| |||||||| ||||| Sbjct 343178 AAGGTTTTCACAAAAATTTGCAT 343200 Score = 136 bits (150), Expect = 1e-26 Identities = 116/143 (81%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || |||||||||| | |||||||||||||||||| ||||| ||||||||||||||| Sbjct 343776 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAATTTTA 343835 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 ||| ||||| || || | || |||||||||||||| ||||| | || ||||| || Sbjct 343836 CTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGTA 343895 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || || || ||||| |||||||| Sbjct 343896 AGAGTCTTCACAAATATCTGCAT 343918 Score = 132 bits (146), Expect = 1e-25 Identities = 114/141 (81%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || || ||||| ||||| || |||||||| ||||||||||||||||| || Sbjct 300398 CCAGCAAAAATGAGCCGTTGTTGATCGGGTGGAATTCCCTCTTTATCCTGAATTTTGCCT 300457 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| ||||| || || || ||||| ||||| || |||| || || || || || Sbjct 300458 TTCACATTTTCAATGGAGTCTGAGGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTGAGA 300517 Query 140718 GTTTTTACAAAAATCTGCATT 140738 ||||| ||||| ||||||||| Sbjct 300518 GTTTTCACAAATATCTGCATT 300538 Score = 131 bits (144), Expect = 5e-25 Identities = 113/140 (81%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| |||| |||||||||||| || ||||||||||||||||| ||||||||| || Sbjct 298858 CCGGCAAATATTAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTACCT 298917 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | || |||||||| ||||| | || | || ||||| || || Sbjct 298918 TTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATGGTTTTTCCAGTAAGC 298977 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| |||||||| ||||| Sbjct 298978 GTTTTAACAAAAATTTGCAT 298997 Score = 129 bits (142), Expect = 2e-24 Identities = 113/141 (80%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| || | |||||||||||| || ||||||||||||||||| |||||||| || Sbjct 325150 CCGGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 325209 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | || |||||||| ||||| | |||| || ||||| || || Sbjct 325210 TTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTAATGGTTTTTCCAGTAAGG 325269 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 325270 GTCTTAACAAAAATTTGCATT 325290 Score = 129 bits (142), Expect = 2e-24 Identities = 115/144 (80%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| |||| |||||||||||| || ||||||||||||||||| |||||||| Sbjct 326279 TTACCAGCAAATATTAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTGAATTTTG 326338 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 ||||||||| || || | ||| || ||||| ||||| | || | || ||||| || Sbjct 326339 CTTTTTACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTA 326398 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || || || |||||||| |||||| Sbjct 326399 AGCGTCTTAACAAAAATTTGCATT 326422 Score = 127 bits (140), Expect = 6e-24 Identities = 117/148 (79%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 140591 TTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAAT 140650 || ||| |||||||| || | |||||||||||| || ||||||||||||||||| ||||| Sbjct 299136 TTATTTACCAGCAAATATCAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTGAAT 299195 Query 140651 TTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCC 140710 ||| |||||||||| || || | || |||||||| || || | || | || ||||| Sbjct 299196 TTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACCTCCAAAGTGATGGTTTTTCC 299255 Query 140711 GGTTAGTGTTTTTACAAAAATCTGCATT 140738 || || || || |||||||| |||||| Sbjct 299256 AGTAAGGGTCTTAACAAAAATTTGCATT 299283 Score = 123 bits (136), Expect = 8e-23 Identities = 112/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||| || |||||||| |||||||| ||||||||| || Sbjct 298576 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTACCT 298635 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | || |||||||| ||||| | || | || ||||| || || Sbjct 298636 TTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTGAGG 298695 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 298696 GTCTTAACAAAAATTTGCATT 298716 Score = 123 bits (136), Expect = 8e-23 Identities = 113/143 (79%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | |||||||||||| || |||||||| |||||||| ||||||||| Sbjct 325430 TTACCAGCAAATATCAAACGTTGCTGATCCGGTGGAATTCCCTCTTTATCTTGAATTTTA 325489 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 ||| ||||| || || | ||| || ||||| ||||| | |||| || || || || Sbjct 325490 CTTTTCACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTA 325549 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 ||||| || |||||||| ||||| Sbjct 325550 AGTGTCTTAACAAAAATTTGCAT 325572 Score = 122 bits (134), Expect = 3e-22 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| || | |||||||||||| || |||||||| ||||||||||| ||||| || Sbjct 325718 CCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 325777 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | ||| || ||||| ||||| | |||| || || || || ||| Sbjct 325778 TTTACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTAAGT 325837 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || |||||||| ||||| Sbjct 325838 GTCTTAACAAAAATTTGCAT 325857 Score = 120 bits (132), Expect = 9e-22 Identities = 111/141 (79%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || | |||||||||||| || |||||||| |||||| | ||||||||| || Sbjct 324868 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTACCTTGAATTTTACCT 324927 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 || ||||| || || | || |||||||| ||||| | || | || ||||| || || Sbjct 324928 TTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTGAGG 324987 Query 140718 GTTTTTACAAAAATCTGCATT 140738 || || |||||||| |||||| Sbjct 324988 GTCTTAACAAAAATTTGCATT 325008 Score = 120 bits (132), Expect = 9e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || || ||||| || | |||||||||||| || |||||||| ||||||||||| ||||| Sbjct 326000 TTACCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTG 326059 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||||||||| || || | ||| || ||||| ||||| | || | || ||||| || Sbjct 326060 CCTTTTACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTA 326119 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || || || |||||||| |||||| Sbjct 326120 AGCGTCTTAACAAAAATTTGCATT 326143 Score = 120 bits (132), Expect = 9e-22 Identities = 113/144 (78%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || || || || ||||| || |||||||| || ||||||||||||||| Sbjct 327249 TTACCAGCAAAAATGAGTCGCTGTTGATCGGGTGGAATTCCCTCCTTATCCTGAATTTTA 327308 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 | || ||||| ||||| | || || ||||| ||||| || |||| || || || || Sbjct 327309 CCCTTCACATTTTCAATTGTGTCTGAAGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 327368 Query 140715 AGTGTTTTTACAAAAATCTGCATT 140738 || ||||| ||||| ||||||||| Sbjct 327369 AGAGTTTTCACAAATATCTGCATT 327392 Score = 118 bits (130), Expect = 3e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 140595 TTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTA 140654 || |||||||| || | ||||||||||||||| |||||||| ||||| ||||| ||||| Sbjct 299423 TTACCAGCAAATATCAAACGTTGCTGATCAGGTGGAATTCCCTCTTTGTCCTGTATTTTG 299482 Query 140655 GCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTT 140714 |||||||||| || || | || ||||| || ||||| | || | || || || || Sbjct 299483 CCTTTTACATTTTCTATAGTGTCGGATGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTA 299542 Query 140715 AGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || ||||||||||| Sbjct 299543 AGCGTTTTAACGAAAATCTGCAT 299565 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || || || |||||||| || || || |||||||| || ||||| ||| | Sbjct 300057 CCAGCAAAAATAAGCCGCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTACTT 300116 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 ||||| || ||||| | ||| || || |||||||||||||||| || ||||| || | Sbjct 300117 TTTACGTTCTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 300176 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || ||||| |||||||| Sbjct 300177 GTCTTCACAAATATCTGCAT 300196 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 |||||||| || || || |||||||| || || || |||||||| || ||||| ||| | Sbjct 326911 CCAGCAAAAATAAGCCGCTGCTGATCTGGTGGGATGCCTTCTTTGTCTTGAATCTTACTT 326970 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 ||||| || ||||| | ||| || || |||||||||||||||| || ||||| || | Sbjct 326971 TTTACGTTCTCAATTGTATCTGACGGCTCAACTTCAAGTGTAATCGTTTTTCCTGTCAAC 327030 Query 140718 GTTTTTACAAAAATCTGCAT 140737 || || ||||| |||||||| Sbjct 327031 GTCTTCACAAATATCTGCAT 327050 >seq3603 Length=332 Score = 118 bits (130), Expect = 3e-21 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| || | |||||||||||| || |||||||| ||||||||||| ||||| || Sbjct 151 CCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 210 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | ||| ||||| || ||||| | || | || || || || || Sbjct 211 TTTACATTTTCTATAGTATCGGATGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGC 270 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || ||||||||||| Sbjct 271 GTTTTAACGAAAATCTGCAT 290 >seq2999 Length=368 Score = 113 bits (124), Expect = 1e-19 Identities = 109/140 (78%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 140598 CCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCT 140657 || ||||| || | |||||||||||| || |||||||| ||||||||||| ||||| || Sbjct 182 CCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 123 Query 140658 TTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGT 140717 |||||||| || || | ||| || || || ||||| | || | || || || || || Sbjct 122 TTTACATTTTCTATAGTATCGGACGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGC 63 Query 140718 GTTTTTACAAAAATCTGCAT 140737 ||||| || ||||||||||| Sbjct 62 GTTTTAACGAAAATCTGCAT 43 >seq72 Length=201692 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 140634 CCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCA 140693 ||||| || ||||||||||||||||| ||||| | ||| | |||||| ||||| ||||| Sbjct 49288 CCTTCCTTGTCCTGAATTTTAGCTTTCACATTCTGAATTGTATCAGAAGGTTCTACTTCC 49347 Query 140694 AGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 | || | |||||||| ||||||||||| ||||| || ||||| Sbjct 49348 AAAGTGATGGTCTTTCCTGTTAGTGTTTTCACAAATATTTGCAT 49391 Score = 86.0 bits (94), Expect = 2e-11 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 140548 CTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGA 140607 |||| |||||||| ||||| || || || || ||||||||||| |||||||||||||| | Sbjct 49153 CTTTCTGAATATTGTAATCGGACAAAGTACGTCCATCTTCAAGCTGTTTTCCAGCAAAAA 49212 Query 140608 TTAGACGTTGCTGATCAGGAGGAAT 140632 | | || |||||||| || ||||| Sbjct 49213 TCAATCGCTGCTGATCGGGTGGAAT 49237 >seq29 Length=361837 Score = 96.9 bits (106), Expect = 1e-14 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 266916 AATGGAGATGGTTATAATTTTGCAAAAGTTCGTCTAAGAACATTACGCCAACCAGTA-AT 266974 |||| |||||| | || |||| ||||| ||| | | | | ||| | || | | || Sbjct 19443 AATGCAGATGGCAACAAGTTTGTCAAAGTGCGTGTGCGTTCGATCCGC-ATCCCGCAGAT 19385 Query 266975 CGGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCCTGA 267034 |||||||||||| | ||||| ||||| || ||||| || ||||| | | | || | | Sbjct 19384 TGGCGATAAATTTGCCAGTCGTCACGGTCAGAAAGGCACTATTGGGATGGTATATCGTCA 19325 Query 267035 AGAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCATGC 267094 ||| | |||||||| | || || || | || || ||||| || ||||| || || Sbjct 19324 AGAGGACATGCCATTCACGTGCGAAGGCATCACGCCGGACATTATAATCAATCCACACGC 19265 Query 267095 TATTCCTAGTCGTATGACAATTGGTCAATT 267124 ||||||||||| ||||| |||||||| || Sbjct 19264 AATTCCTAGTCGAATGACCATTGGTCATTT 19235 >seq169 Length=80349 Score = 84.2 bits (92), Expect = 7e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 266976 GGCGATAAATTTTCTAGTCGCCACGGACAAAAAGGTACCATTGGTACGATTATTCCTGAA 267035 || || |||||| ||||||| || || |||||||||| || | | | |||| | Sbjct 56682 GGTGACAAATTTGCTAGTCGACATGGTCAAAAAGGTATCAATTCTTTTCTATGGCCTGCA 56741 Query 267036 GAAAATATGCCATTTAATGAAGATGGAATTAGACCTGATATTATTATTAATCCTCATGCT 267095 ||||| |||||||||| || ||||| ||||||||||| ||||||| |||| | Sbjct 56742 GAAAACATGCCATTTACCGAGTCAGGAATGGTCCCTGATATTATATTTAATCCACATGGT 56801 Query 267096 ATTCCTAGTCGTATGACAATTGGT 267119 |||| |||||||||| ||||| Sbjct 56802 TTTCCATCTCGTATGACAGTTGGT 56825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515126382784982