Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq68 95.1 1e-14 >seq68 Length=215320 Score = 95.1 bits (104), Expect = 1e-14 Identities = 127/174 (73%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 |||| |||||||||||| || || || || || ||||||| ||||| | ||||| | Sbjct 30888 GTTCTCAAATAGTACATCCCAGTTTTCAGTCCTCTCTTCCAGCCGTAGAAATGCATCGAC 30829 Query 78250 GACAGCTTGGCCAGACTCGGGTTC-TCCATGAAGATGTTGAGCGACTGGGACTGGTCGAT 78308 | ||| || | || | | ||| || | ||| || || | ||||||||| ||||| || Sbjct 30828 GTCAGTTTAG-CATAGTTGGGCTCGGCAATGTGAATATTCAACGACTGGGATTGGTCAAT 30770 Query 78309 GTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362 | | ||||| | ||||| |||||||| ||||| | ||||| | ||| ||||| Sbjct 30769 GAAAGCACCCCTTTCGGCGGCCATGTCTATGACGCATTTTTGGGAAATTTCCCA 30716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548479587843360