Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7 98.7 1e-15 >seq7 Length=818235 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || || ||||||| | ||||||||||| |||| || || || || || || || Sbjct 211380 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCGAATTGA 211321 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | | ||||| ||| ||| |||||||||||| ||||||||||| | | Sbjct 211320 CCAATCGGCAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATA 211261 Query 152149 ATCGTGCCCTGCAGACTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCC 152208 || |||| | |||||| ||||||| ||||| || || | || || || | | | || Sbjct 211260 ATGGTGCTCATCAGACTGACTTCACCATGGTGGTAAGCTGAATGTTCAGCAACGGAACCA 211201 Query 152209 GCCAACTGCGCCACCTTCA 152227 || | ||| || ||||||| Sbjct 211200 GCAAGCTGAGCGACCTTCA 211182 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || |||||||| | | || || ||||| |||| || ||| || || |||||||| Sbjct 211380 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCGAATTGA 211321 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| ||||| ||| | ||| | ||| ||| |||||| || || |||||||| || | | Sbjct 211320 CCAATCGGCAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATA 211261 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || | || || | ||||||||||| || || | || || || ||| | || Sbjct 211260 ATGGTGCTCATCAGACTGACTTCACCATGGTGGTAAGCTGAATGTTCAGCAACGGAACCA 211201 Query 117485 GCCAGCTGAGCCACCTTCA 117503 || |||||||| ||||||| Sbjct 211200 GCAAGCTGAGCGACCTTCA 211182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547170895721200