Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq20 118 1e-21 seq71 102 9e-17 seq3603 95.1 1e-14 seq2999 89.7 6e-13 >seq20 Length=498608 Score = 118 bits (130), Expect = 1e-21 Identities = 113/145 (78%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || || || || || |||||||| || || || | Sbjct 327392 AATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCTTC 327333 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| |||| |||||| |||||||||||| |||||||||||||| || || || Sbjct 327332 AGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAGGAGGGAATTCCACCCGATCA 327273 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| || ||||||||||||||| Sbjct 327272 ACAGCGACTCATTTTTGCTGGTAAG 327248 Score = 102 bits (112), Expect = 9e-17 Identities = 112/148 (76%), Gaps = 6/148 (4%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTC 27461 ||||||||| ||||| ||||||||||| || || || || ||| | || || || ||| Sbjct 326143 AATGCAAATTTTTGTTAAGACGCTTACTGGAAAAACCATCACTTTGGAAGTCGAACCGTC 326084 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 || ||| || | ||| | || | ||||| ||||| || ||||||||||| ||||| Sbjct 326083 AG---ATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGA 326027 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| ||| | |||||||| |||||| Sbjct 326026 TCAGCAACGTTTGATTTTTGCCGGTAAG 325999 Score = 100 bits (110), Expect = 3e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| || || || || ||||| ||| | || || || || Sbjct 298716 AATGCAAATTTTTGTTAAGACCCTCACTGGAAAAACTATCACTTTGGAAGTGGAACCATC 298657 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| |||| | ||||||||| || || ||||||||||| ||||| || Sbjct 298656 CGACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAGGGAATTCCACCAGATCA 298597 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||| | || |||||||||| Sbjct 298596 GCAACGTTTGATATTTGCTGGTA 298574 Score = 100 bits (110), Expect = 3e-16 Identities = 111/147 (76%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTCA 27462 |||||||| ||||| ||||| ||||| || || || |||||| | || || || |||| Sbjct 325572 ATGCAAATTTTTGTTAAGACACTTACTGGGAAAACCATTACTTTGGAAGTCGAACCGTCA 325513 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | ||| || | ||| |||| ||||||||| || || ||||||||||| || || Sbjct 325512 G---ATACAATAGAGAATGTGAAAAGTAAAATTCAAGATAAAGAGGGAATTCCACCGGAT 325456 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAG 27549 ||||| ||| | || |||||||||||| Sbjct 325455 CAGCAACGTTTGATATTTGCTGGTAAG 325429 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||| || || || || || || || |||||||| || || || | Sbjct 300538 AATGCAGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAACCCTC 300479 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || ||||| |||| |||| | ||||||||||| || ||||||||||| || || || Sbjct 300478 AGACTCCATTGAAAATGTGAAAGGCAAAATTCAGGATAAAGAGGGAATTCCACCCGATCA 300419 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 || || || ||||||||||||| Sbjct 300418 ACAACGGCTCATTTTTGCTGGTA 300396 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| || || || || ||||| ||| | || || || || Sbjct 325008 AATGCAAATTTTTGTTAAGACCCTCACTGGAAAAACTATCACTTTGGAAGTGGAACCATC 324949 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| |||| | ||||||||| | || ||||||||||| ||||| || Sbjct 324948 CGACACAATAGAGAATGTGAAAGGTAAAATTCAAGGTAAAGAGGGAATTCCACCAGATCA 324889 Query 27525 GCAGCGTCTAATTTTTGCTGGTA 27547 ||| ||| | || |||||||||| Sbjct 324888 GCAACGTTTGATATTTGCTGGTA 324866 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/145 (75%), Gaps = 6/145 (4%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTCA 27462 |||||||| ||||| ||||| ||||| || || || |||||| | || || || |||| Sbjct 325857 ATGCAAATTTTTGTTAAGACACTTACTGGGAAAACCATTACTTTGGAAGTCGAACCGTCA 325798 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | ||| || | ||| | || | ||||| ||||| || ||||||||||| ||||| Sbjct 325797 G---ATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGAT 325741 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTA 27547 ||||| ||| | |||||||| |||| Sbjct 325740 CAGCAACGTTTGATTTTTGCCGGTA 325716 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || ||||| ||||| ||||| || || ||||| || || || ||||| || Sbjct 343921 ATTATGCAGATATTTGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTTGAACCA 343862 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 || | ||| | |||| | || |||||||||||| ||||| || |||||||| || Sbjct 343861 TCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGAT 343802 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAA 27548 ||||| | |||| ||||| ||||| Sbjct 343801 CAGCAAAGATTAATCTTTGCAGGTAA 343776 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| |||||| | || || || || ||||| ||||| |||||| | Sbjct 300196 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 300137 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | || ||| ||||| ||||| || || || || ||||| ||| Sbjct 300136 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAG 300077 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| || ||||||||||||| Sbjct 300076 CAGCGGCTTATTTTTGCTGGTA 300055 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| |||||| | || || || || ||||| ||||| |||||| | Sbjct 327050 ATGCAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 326991 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | || ||| ||||| ||||| || || || || ||||| ||| Sbjct 326990 GATACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAG 326931 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 ||||| || ||||||||||||| Sbjct 326930 CAGCGGCTTATTTTTGCTGGTA 326909 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || |||||||| || || || || ||| | || || ||| || Sbjct 299565 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAGCCATCC 299506 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | || | ||||| |||||||| ||||||||||| || || ||| Sbjct 299505 GACACTATAGAAAATGTAAAAGGCAAAATACAGGACAAAGAGGGAATTCCACCTGATCAG 299446 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || ||| | || |||||||||||| Sbjct 299445 CAACGTTTGATATTTGCTGGTAAG 299422 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | || || || || || || | || || ||| || | Sbjct 342913 ATGCAAATTTTTGTGAAAACCTTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 342854 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| ||||| ||||||||| || ||||| || ||||| || || ||| Sbjct 342853 GATACGATTGAAAATGTGAAGAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 342794 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || || | || |||||||||||| Sbjct 342793 CAACGATTGATATTTGCTGGTAAG 342770 Score = 93.3 bits (102), Expect = 5e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | || || || || || || | || || ||| || | Sbjct 343200 ATGCAAATTTTTGTGAAAACCTTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 343141 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| ||||| ||||||||| || ||||| || ||||| || || ||| Sbjct 343140 GATACGATTGAAAATGTGAAGAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 343081 Query 27526 CAGCGTCTAATTTTTGCTGGTAAG 27549 || || | || |||||||||||| Sbjct 343080 CAACGCTTGATATTTGCTGGTAAG 343057 Score = 91.5 bits (100), Expect = 2e-13 Identities = 109/147 (74%), Gaps = 6/147 (4%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGA---GTC 27461 ||||||||| ||||| ||||||||||| || || || || ||| | || || || ||| Sbjct 326422 AATGCAAATTTTTGTTAAGACGCTTACTGGAAAAACCATCACTTTGGAAGTCGAACCGTC 326363 Query 27462 AGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGA 27521 || ||| || | ||| | || |||||||| || || || |||||||| || || Sbjct 326362 AG---ATACAATAGAGAATGTAAAAAGCAAAATTCAAGATAAAGAAGGAATTCCACCGGA 326306 Query 27522 CCAGCAGCGTCTAATTTTTGCTGGTAA 27548 ||||| ||| |||| ||||||||||| Sbjct 326305 TCAGCAACGTTTAATATTTGCTGGTAA 326279 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| || || | || || || || || || | || || ||| || | Sbjct 343487 ATGCAAATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATCT 343428 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| ||||| ||||||||| || ||||| || ||||| || || ||| Sbjct 343427 GATACGATTGAAAATGTGAAGAGTAAAATTCAAGATAAGGAAGGCATTCCGCCTGATCAG 343368 Query 27526 CAGCGTCTAATTTTTGCTGGTAA 27548 || || | || ||||||||||| Sbjct 343367 CAACGATTGATATTTGCTGGTAA 343345 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| ||||| ||||| || || || || ||| | ||||| || || Sbjct 299283 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACCATCACTTTGGAGGTGGAACCATC 299224 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | ||| | || | |||||||| || || || |||||||| || || || Sbjct 299223 CGACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCA 299164 Query 27525 GCAGCGTCTAATTTTTGCTGGTAA 27548 ||| ||| | || ||||||||||| Sbjct 299163 GCAACGTTTGATATTTGCTGGTAA 299140 >seq71 Length=204746 Score = 102 bits (112), Expect = 9e-17 Identities = 108/141 (77%), Gaps = 11/141 (8%) Strand=Plus/Plus Query 64706 CGTTTGGTCAGCGTCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCAT 64765 ||||||||| |||| |||||||| ||| |||| ||||||||||| || | Sbjct 134454 CGTTTGGTC-GCGT-TCGCAGCTGTTG---------AAGGCATTTTCTTTTCGGGCAGCT 134502 Query 64766 TCTGTTCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACG 64825 || || ||||||||| | |||||||| ||||||||||||||| || | || |||| Sbjct 134503 TCGCGTCAATTTTCTGGTTGAAAAAGCGAGGCCTGATGCCAGGTTTGACCTTCAGCAACG 134562 Query 64826 AGCTGATCTCTCGGGACGAGG 64846 ||||||||||||| ||||||| Sbjct 134563 AGCTGATCTCTCGTGACGAGG 134583 >seq3603 Length=332 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || |||||||| || || || || ||| | || || ||| || Sbjct 290 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAGCCATCC 231 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | || | ||||| ||||| || ||||||||||| ||||| ||| Sbjct 230 GATACTATAGAAAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 171 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 || ||| | |||||||| |||| Sbjct 170 CAACGTTTGATTTTTGCCGGTA 149 >seq2999 Length=368 Score = 89.7 bits (98), Expect = 6e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || |||||||| || || || || ||| | || || ||| | Sbjct 43 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAGCCGTCC 102 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | || | ||||| ||||| || ||||||||||| ||||| ||| Sbjct 103 GATACTATAGAAAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 162 Query 27526 CAGCGTCTAATTTTTGCTGGTA 27547 || ||| | |||||||| |||| Sbjct 163 CAACGTTTGATTTTTGCCGGTA 184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570263392165280