Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq20 82.4 5e-11 >seq20 Length=498608 Score = 82.4 bits (90), Expect = 5e-11 Identities = 78/100 (78%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | | ||||| ||||||||| | ||| || ||||| ||||||||||||||||| Sbjct 343489 CCGCCACGTAAACGCAGCACCAAATGCAAAGTACTTTCCTTCTGAATGTTATAATCTGAC 343548 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTA 34579 | |||||| | || || |||||||| || || | || || Sbjct 343549 AATGTTCGACCATCCTCCAGTTGTTTCCCTGCCATTAATA 343588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314704306952402