Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq20 95.1 9e-15 >seq20 Length=498608 Score = 95.1 bits (104), Expect = 9e-15 Identities = 78/95 (82%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 27922 TTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAG 27981 ||| | || ||||| ||||| |||| ||| | ||||||||||| ||||| || |||||| Sbjct 300292 TTTTCAGGCAAACAGTTGGAAGACGGACGTACTTTGTCCGATTATAACATTCAGAAAGAG 300233 Query 27982 AGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| | || |||||||||||||||||||| || Sbjct 300232 AGCACGCTTCACTTGGTTTTGCGTTTGCGTGGTGG 300198 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 27919 ATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAA 27978 || ||| | || ||||| ||||| || | ||| | ||||||||||| ||||| || ||| Sbjct 327149 ATATTTTCAGGCAAACAGTTGGAAGATGGACGTACTTTGTCCGATTATAACATTCAGAAA 327090 Query 27979 GAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 || ||||| | || |||||||||||||||||||| || Sbjct 327089 GAAAGCACGCTTCACTTGGTTTTGCGTTTGCGTGGTGG 327052 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 27928 GGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACT 27987 || |||||| |||| || | || | || ||||| ||||| ||||| ||||| |||||| Sbjct 343290 GGGAAACAACTGGAAGATGGTCGTACATTATCCGACTACAATATCCAGAAAGAAAGCACT 343231 Query 27988 TTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| ||||||| |||||||| Sbjct 343230 TTGCATTTGGTGCTGCGTTTACGTGGCGG 343202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355833801340638