Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq20 96.9 2e-15 seq3603 91.5 1e-13 seq2999 91.5 1e-13 >seq20 Length=498608 Score = 96.9 bits (106), Expect = 2e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||||||||| || || || ||||| |||||| | ||||| || | | Sbjct 299565 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAGCCATCC 299506 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| | |||| ||||| ||||| |||||||| || | || || ||||| Sbjct 299505 GACACTATAGAAAATGTAAAAGGCAAAATACAGGACAAAGAGGGAATTCCACCTGATCAG 299446 Query 23731 CAGCGTTTAATATTTGCCGGCAA 23753 || ||||| |||||||| || || Sbjct 299445 CAACGTTTGATATTTGCTGGTAA 299423 Score = 95.1 bits (104), Expect = 8e-15 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| ||||| |||||||| || || |||||||| |||||| | ||||| || | | Sbjct 298997 ATGCAAATTTTTGTTAAAACGCTTACTGGAAAAACCATCACTTTGGAAGTGGAACCATCC 298938 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| |||||| || |||||||| | || |||||||| Sbjct 298937 GACACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 298878 Query 23731 CAGCGTTTAATATTTGCCGG 23750 || ||||||||||||||||| Sbjct 298877 CAACGTTTAATATTTGCCGG 298858 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| ||||| ||||| || |||||||| || ||| | ||||| || | | Sbjct 325290 AATGCAAATTTTTGTTAAGACCCTTACTGGAAAAACCATTACTTTGGAAGTGGAACCATC 325231 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || | ||||| |||||| || |||||||| | || |||||||| Sbjct 325230 CGACACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 325171 Query 23730 ACAGCGTTTAATATTTGCCGG 23750 || ||||| ||||||||||| Sbjct 325170 GCAACGTTTGATATTTGCCGG 325150 Score = 84.2 bits (92), Expect = 1e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| ||||| || || || |||||||| |||||| | ||||| || | | Sbjct 326422 AATGCAAATTTTTGTTAAGACGCTTACTGGAAAAACCATCACTTTGGAAGTCGAACCGTC 326363 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || | ||||| |||||| || |||||||| | || || ||||| Sbjct 326362 AGATACAATAGAGAATGTAAAAAGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCA 326303 Query 23730 ACAGCGTTTAATATTTGCCGGCAA 23753 || |||||||||||||| || || Sbjct 326302 GCAACGTTTAATATTTGCTGGTAA 326279 >seq3603 Length=332 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||||||||| || || || ||||| |||||| | ||||| || | | Sbjct 290 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAGCCATCC 231 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | |||| ||||| ||||| || ||||| || | || |||||||| Sbjct 230 GATACTATAGAAAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 171 Query 23731 CAGCGTTTAATATTTGCCGG 23750 || ||||| || |||||||| Sbjct 170 CAACGTTTGATTTTTGCCGG 151 >seq2999 Length=368 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||||||||| || || || ||||| |||||| | ||||| || | | Sbjct 43 ATGCAGATTTTCGTTAAAACGCTTACTGGGAAAACCATCACTTTGGAAGTGGAGCCGTCC 102 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || ||| | |||| ||||| ||||| || ||||| || | || |||||||| Sbjct 103 GATACTATAGAAAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 162 Query 23731 CAGCGTTTAATATTTGCCGG 23750 || ||||| || |||||||| Sbjct 163 CAACGTTTGATTTTTGCCGG 182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337982436069752