Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq71 123 2e-23 >seq71 Length=204746 Score = 123 bits (136), Expect = 2e-23 Identities = 245/358 (68%), Gaps = 16/358 (4%) Strand=Plus/Minus Query 4584 ATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATA 4643 ||||| ||||| || || || || ||||| | |||| |||||| | ||| || || Sbjct 134569 ATCAGCTCGTTGCTGAAGGTCAAACCTGGCATCAGGCCTCGCTTTTTCAACCAGAAAATT 134510 Query 4644 GCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCG---G 4700 | || || || |||||||| |||||||| || || || ||||| || || || | Sbjct 134509 GACGCGAAGCTGCCCGAAAAGAAAATGCCTTCAACAGCTGCGAACGCGACCAAACGTTCG 134450 Query 4701 GACCCGAACGAGC--TGGCTTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCT 4758 || ||||| |||| ||| ||||| || ||||||| |||||||||| Sbjct 134449 GA---GAACGGTGATTGGCG--GTCACCGATCCAACGCAAAGCCCAGTCTGCTTTTTTCT 134395 Query 4759 TAACGCACGGAATTGTGTATATAGCGTT---AAATAATTTACTTTTTTCAAATGGGTCTT 4815 | || |||||||| || | || ||||| || |||| || || | || || Sbjct 134394 TCACACACGGAATGGTTTCGATTGCGTTGAACAAAAATTCAC---GCTCCACCGGATCAC 134338 Query 4816 GAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCT 4875 | || || ||||| || | ||||| ||||| || ||||| | ||||||||| ||||| | Sbjct 134337 GGATGTAGGTGTCAATCAACAGGCTGTACATCTCGGAATGGACATTTTCTATGGCAATTT 134278 Query 4876 GAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTAC 4933 | || || || ||| | | ||||| || ||||||| ||| | | |||||| ||| || Sbjct 134277 GGAAGCCATAGAAGAAACGTGCTTCGGTCACTTGAATTTCTTGAGAAAATCGTTCCAC 134220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427015280425802