Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq68 118 1e-21 >seq68 Length=215320 Score = 118 bits (130), Expect = 1e-21 Identities = 142/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 76802 TGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAA 76861 ||| || || || | | ||||||||| |||||||| || || |||| |||||||| Sbjct 30898 TGCCGGCTTGGTTCTCAAATAGTACATCCCAGTTTTCAGTCCTCTCTTCCAGCCGTAGAA 30839 Query 76862 ATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATATTCATCGACTGACT 76921 |||||| |||||||| | ||| | || ||||| || |||||||||| |||||| Sbjct 30838 ATGCATCGACGTCAGTTTAGCATAGTTGGGCTCGGCAATGTGAATATTCAACGACTGGGA 30779 Query 76922 TTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGAGGAATTTC 76981 ||| || |||||||| || || || || ||||| | ||| | | ||||| | |||||| Sbjct 30778 TTGGTCAATGAAAGCACCCCTTTCGGCGGCCATGTCTATGACGCATTTTTGGGAAATTTC 30719 Query 76982 CCAAATAGTTTTG 76994 ||||| || ||| Sbjct 30718 CCAAACCGTCTTG 30706 Score = 105 bits (116), Expect = 9e-18 Identities = 184/261 (70%), Gaps = 10/261 (4%) Strand=Plus/Minus Query 77284 ATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTATTGTAGAATTCCGT 77343 ||| ||||||||| | ||| ||||| ||||| ||| | || ||||| ||||| || | Sbjct 30285 ATTCCCAATCCCACAAATCCGAAGGCTGAACATTCCACATGTCATATTGAAGAATACCCT 30226 Query 77344 TACTAGCATATGATCCATTATATGTTTCATAAGGTCCTT-CTGTTTCAGCTAGTTCACAA 77402 ||||||| ||| || | ||| || || || || || |||||| || | || || Sbjct 30225 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTT-GCCAAATCGCAG 30167 Query 77403 CTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGA--TCTTG-T 77459 || ||| || || | ||||| || ||||| ||||| |||||||| | ||| | | Sbjct 30166 CTACTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAGTCTAGCT 30107 Query 77460 GCTTCA-ATACTATCAAACGGATAATGTAAAAGAATAAAGGCATCTGCTAATCCCTGAAC 77518 |||| || ||||||||||| | || | ||| || ||||| || || || || || Sbjct 30106 TCTTCGGAT----TCAAACGGATATCGCAACAAAATGAAAGCATCCGCCAACCCTTGCAC 30051 Query 77519 TCCAATACCAATAGGTCTATG 77539 ||||||||||| |||| ||| Sbjct 30050 ACCAATACCAATTGGTCGATG 30030 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 77123 TATTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCAC 77182 || ||| |||||||| || | || | |||||| || | ||| || |||| ||| || Sbjct 30505 TACTTGGAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTATGCTTCTAC 30446 Query 77183 AGATTCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAA 77242 ||||||||||| ||||||||||| || || || ||||| ||||| || |||| || || Sbjct 30445 TGATTCATTGTTGCCCAAAATTTGCGCTGTTGATGCAGTCGGCATTGGAGCCAACAGCAA 30386 Query 77243 ACTATTTCTGAGACCAT 77259 ||||| ||||||| Sbjct 30385 CGAATTTCGCAGACCAT 30369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694611541924160