Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq68 116 5e-21 >seq68 Length=215320 Score = 116 bits (128), Expect = 5e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427 || |||| ||||| ||||| | | ||| || || || | | ||||||||| ||| Sbjct 30927 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 30868 Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487 ||||| || || |||| |||||||||||||| || ||||| | ||| | || Sbjct 30867 GTTTTCAGTCCTCTCTTCCAGCCGTAGAAATGCATCGACGTCAGTTTAGCATAGTTGGGC 30808 Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547 ||||| || |||||||||| |||||| ||| || |||||||| || || || || ||| Sbjct 30807 TCGGCAATGTGAATATTCAACGACTGGGATTGGTCAATGAAAGCACCCCTTTCGGCGGCC 30748 Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTG 75589 || | ||| | | ||||| | ||||||||||| || ||| Sbjct 30747 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAACCGTCTTG 30706 Score = 109 bits (120), Expect = 8e-19 Identities = 196/280 (70%), Gaps = 6/280 (2%) Strand=Plus/Minus Query 75879 ATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGT 75938 ||| ||||||||| | ||| || || ||||| ||| | || ||||| ||||| || | Sbjct 30285 ATTCCCAATCCCACAAATCCGAAGGCTGAACATTCCACATGTCATATTGAAGAATACCCT 30226 Query 75939 TGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAAC 75998 | ||||| ||| || | ||| || ||||| | || || || || | ||||| | Sbjct 30225 TACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTTTGCCAAATCGCAGC 30166 Query 75999 TCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATT-AAGA-TCTTGCG- 76055 | ||||||||| | ||||| || ||||| ||||| |||||||| || | ||| || Sbjct 30165 TACTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATTCAACAGTCTAGCTT 30106 Query 76056 CTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTC 76115 |||| || | |||| ||||| | || | ||| || ||||| || | || || || | Sbjct 30105 CTTCG-GATT--CAAACGGATATCGCAACAAAATGAAAGCATCCGCCAACCCTTGCACAC 30049 Query 76116 CAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGC 76155 |||||||||| |||| ||| | || || || |||| || Sbjct 30048 CAATACCAATTGGTCGATGACGTTTGTTAGACCTTTCTGC 30009 Score = 93.3 bits (102), Expect = 6e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 77319 ATAAGTCTTCCATTACGTCGCTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGG 77378 |||| || || || || ||||| || | |||||| ||||| ||||| | ||| |||| Sbjct 28308 ATAAATCATCGATCACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGG 28249 Query 77379 CTATTCTAGCAGCTAGAATTGCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTT 77438 |||| | || || | || |||||||||||||||| |||||| || || | |||| Sbjct 28248 CTATGCGTGCGGCCAATATCGCATAGTCAGGATGTTTTGTAGTCATTGTAGCGGAAATTT 28189 Query 77439 CTGCCGCTAAAGTATCTAATTCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTT 77498 | || || ||| | || ||||| | ||| || || || | ||| || || ||| |||| Sbjct 28188 CAGCAGCCAAATTGTCCAATTCGACAGTTGTGACACCTTGATACAGGCCGGCAATGACTT 28129 Query 77499 T 77499 | Sbjct 28128 T 28128 Score = 93.3 bits (102), Expect = 6e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 ||| |||||||| || | || | ||||| || | ||| || |||| ||| || || Sbjct 30502 TTGGAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTATGCTTCTACTGA 30443 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 ||||||||| ||||||||||| || ||||| ||||||||||| || |||| || || Sbjct 30442 TTCATTGTTGCCCAAAATTTGCGCTGTTGATGCAGTCGGCATTGGAGCCAACAGCAACGA 30383 Query 75841 ATTTCTGAGACCAT 75854 ||||| ||||||| Sbjct 30382 ATTTCGCAGACCAT 30369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712875636382080