Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq20 100 6e-16 seq3603 91.5 3e-13 seq2999 91.5 3e-13 >seq20 Length=498608 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| ||||||||||| || ||| ||||| ||||| ||||| || || || Sbjct 299423 TTACCAGCAAATATCAAACGTTGCTGATCAGGTGGAATTCCCTCTTTGTCCTGTATTTTG 299482 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||||| | || |||||||| || | || ||||| | |||||| || || || || Sbjct 299483 CCTTTTACATTTTCTATAGTGTCGGATGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTA 299542 Query 283077 AAAGTCTTAACGAATATCTGCAT 283099 | || |||||||| |||||||| Sbjct 299543 AGCGTTTTAACGAAAATCTGCAT 299565 Score = 93.3 bits (102), Expect = 9e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || |||||||| ||||||||||| || || ||||| ||||| || || || || || Sbjct 326000 TTACCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTG 326059 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 ||||||| | || || || || || | ||||||||| | |||||| || || || || Sbjct 326060 CCTTTTACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTGATGGTTTTTCCAGTA 326119 Query 283077 AAAGTCTTAACGAATATCTGCATT 283100 | |||||||| || || |||||| Sbjct 326120 AGCGTCTTAACAAAAATTTGCATT 326143 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| ||||||||||| || || ||||| ||||| || ||||| || || || Sbjct 298576 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCTTGAATTTTACCT 298635 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || || ||||| || | ||| ||||| | |||||| || || || || | Sbjct 298636 TTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTGAGG 298695 Query 283080 GTCTTAACGAATATCTGCATT 283100 |||||||| || || |||||| Sbjct 298696 GTCTTAACAAAAATTTGCATT 298716 Score = 87.8 bits (96), Expect = 4e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 282953 TTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGAT 283012 || ||| || ||||| ||||||||||| || || ||||| || || || ||||| || Sbjct 299136 TTATTTACCAGCAAATATCAAACGTTGCTGATCCGGTGGAATTCCTTCTTTATCTTGAAT 299195 Query 283013 CTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACC 283072 || ||||||| | || || ||||| || | ||| || || | |||||| || || || Sbjct 299196 TTTGCCTTTTACATTCTCTATTGTGTCGGATGGTTCCACCTCCAAAGTGATGGTTTTTCC 299255 Query 283073 CGTCAAAGTCTTAACGAATATCTGCATT 283100 || | |||||||| || || |||||| Sbjct 299256 AGTAAGGGTCTTAACAAAAATTTGCATT 299283 Score = 87.8 bits (96), Expect = 4e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 |||||||| ||||||||||| || || ||||| || || || ||||| || || || Sbjct 325150 CCGGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCTTCTTTATCTTGAATTTTGCCT 325209 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || || ||||| || | ||| ||||| | ||| || || || || || | Sbjct 325210 TTTACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTAATGGTTTTTCCAGTAAGG 325269 Query 283080 GTCTTAACGAATATCTGCATT 283100 |||||||| || || |||||| Sbjct 325270 GTCTTAACAAAAATTTGCATT 325290 Score = 86.0 bits (94), Expect = 1e-11 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 |||||||| ||||||||||| || || ||||| ||||| || || || || || || Sbjct 325718 CCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 325777 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || || || || || | ||||||||| | ||| || || || || || | Sbjct 325778 TTTACATTCTCTATTGTATCTGACGGTTCGACTTCCAAAGTAATGGTTTTCCCAGTAAGT 325837 Query 283080 GTCTTAACGAATATCTGCAT 283099 |||||||| || || ||||| Sbjct 325838 GTCTTAACAAAAATTTGCAT 325857 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || ||||| || | || ||||| || ||||| |||||||| || || || || Sbjct 327249 TTACCAGCAAAAATGAGTCGCTGTTGATCGGGTGGAATTCCCTCCTTATCCTGAATTTTA 327308 Query 283017 GCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTC 283076 | || || | || || ||||| |||| ||| ||||| ||||| || || || || || Sbjct 327309 CCCTTCACATTTTCAATTGTGTCTGAAGGTTCCACTTCCAGAGTAATGGTTTTCCCAGTG 327368 Query 283077 AAAGTCTTAACGAATATCTGCATTTTC 283103 | ||| || || ||||||||||||||| Sbjct 327369 AGAGTTTTCACAAATATCTGCATTTTC 327395 Score = 86.0 bits (94), Expect = 1e-11 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 282957 TTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTT 283016 || || |||||||| || | ||| || ||| ||||| || ||||| || || || ||| Sbjct 343776 TTACCTGCAAAGATTAATCTTTGCTGATCAGGAGGAATGCCTTCCTTATCCTGAAT-TTT 343834 Query 283017 GCTTTTA-CGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGT 283075 |||||| | | ||||| ||||| || | ||| ||||| || || || || || || || Sbjct 343835 ACTTTTAACATTTTCGATGGTGTCTGATGGTTCAACTTCTAGTGTTATAGTTTTTCCAGT 343894 Query 283076 CAAAGTCTTAACGAATATCTGCAT 283099 | |||||| || ||||||||||| Sbjct 343895 AAGAGTCTTCACAAATATCTGCAT 343918 Score = 84.2 bits (92), Expect = 5e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 || ||||| ||||||||||| || || ||||| ||||| || |||| || || || Sbjct 324868 CCAGCAAATATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTACCTTGAATTTTACCT 324927 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 || || | || || ||||| || | ||| ||||| | |||||| || || || || | Sbjct 324928 TTCACATTCTCTATTGTGTCGGATGGTTCCACTTCCAAAGTGATAGTTTTTCCAGTGAGG 324987 Query 283080 GTCTTAACGAATATCTGCATT 283100 |||||||| || || |||||| Sbjct 324988 GTCTTAACAAAAATTTGCATT 325008 >seq3603 Length=332 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 |||||||| ||||||||||| || || ||||| ||||| || || || || || || Sbjct 151 CCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 210 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || ||||| || || | || ||||| | |||||| || || || || | Sbjct 211 TTTACATTTTCTATAGTATCGGATGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGC 270 Query 283080 GTCTTAACGAATATCTGCAT 283099 || |||||||| |||||||| Sbjct 271 GTTTTAACGAAAATCTGCAT 290 >seq2999 Length=368 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 282960 CCGGCAAAGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCT 283019 |||||||| ||||||||||| || || ||||| ||||| || || || || || || Sbjct 182 CCGGCAAAAATCAAACGTTGCTGATCTGGTGGAATTCCCTCTTTATCCTGTATTTTGCCT 123 Query 283020 TTTACGGTATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAA 283079 ||||| | || ||||| || || | || ||||| | |||||| || || || || | Sbjct 122 TTTACATTTTCTATAGTATCGGACGGCTCCACTTCCAAAGTGATGGTTTTCCCAGTAAGC 63 Query 283080 GTCTTAACGAATATCTGCAT 283099 || |||||||| |||||||| Sbjct 62 GTTTTAACGAAAATCTGCAT 43 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046650765584476