Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20pseudospiralis_20[genbank_20GCA_5F001447645.1_202015- 11-24] 6,594 sequences; 49,152,658 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq20 104 6e-17 >seq20 Length=498608 Score = 104 bits (114), Expect = 6e-17 Identities = 114/152 (75%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 177912 GTTAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTG 177971 ||| |||| | || || || ||||| ||||| || |||||||| || || || || || Sbjct 343927 GTTCAAATTATGCAGATATTTGTGAAGACTCTTACTGGAAAAACTATAACACTAGAAGTT 343868 Query 177972 GAAAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCT 178031 ||| |||||||||||||| || || ||| || |||||||| || ||||| || ||| Sbjct 343867 GAACCATCAGACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCT 343808 Query 178032 CCGGACCAGCAACGACTTATCTTCGCCGGAAA 178063 || || |||||| || | ||||| || || || Sbjct 343807 CCTGATCAGCAAAGATTAATCTTTGCAGGTAA 343776 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || |||||||| ||||| | ||||||||| || ||| Sbjct 299279 CAAATTTTTGTTAAGACCCTTACTGGAAAAACCATCACTTTGGAGGTGGAACCATCCGAC 299220 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || ||||| || ||||||||||| || ||||| |||||| Sbjct 299219 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAGCAA 299160 Query 178044 CGACTTATCTTCGCCGGAAAA 178064 || | || || || || ||| Sbjct 299159 CGTTTGATATTTGCTGGTAAA 299139 Score = 100 bits (110), Expect = 7e-16 Identities = 110/146 (75%), Gaps = 3/146 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || |||||||||||||| || ||||| || || || || |||||| Sbjct 300540 AAAATGC---AGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAA 300484 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||||||| |||| || || || ||| || |||||||| ||||| ||||| || || Sbjct 300483 CCCTCAGACTCCATTGAAAATGTGAAAGGCAAAATTCAGGATAAAGAGGGAATTCCACCC 300424 Query 178035 GACCAGCAACGACTTATCTTCGCCGG 178060 || || ||||| || || || || || Sbjct 300423 GATCAACAACGGCTCATTTTTGCTGG 300398 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || ||||| || || |||||||| ||||| | || |||||| || ||| Sbjct 298994 CAAATTTTTGTTAAAACGCTTACTGGAAAAACCATCACTTTGGAAGTGGAACCATCCGAC 298935 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || ||||| || ||||||||||| || || || |||||| Sbjct 298934 ACAATAGAGAATGTGAAAGGTAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAA 298875 Query 178044 CGACTTATCTTCGCCGG 178060 || | || || ||||| Sbjct 298874 CGTTTAATATTTGCCGG 298858 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | |||||||||||||| || || || || || ||||| Sbjct 300193 CAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAGAT 300134 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| |||||||| ||||||||||| ||||| || || ||||| Sbjct 300133 ACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAGCAG 300074 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || || || Sbjct 300073 CGGCTTATTTTTGCTGG 300057 Score = 98.7 bits (108), Expect = 2e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || ||||| || | |||||||||||||| || || || || || ||||| Sbjct 327047 CAGATATTTGTGAAGACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCAGAT 326988 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || |||||||| ||| |||||||| ||||||||||| ||||| || || ||||| Sbjct 326987 ACAATTGAGAACGTAAAAAGTAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAGCAG 326928 Query 178044 CGACTTATCTTCGCCGG 178060 || ||||| || || || Sbjct 326927 CGGCTTATTTTTGCTGG 326911 Score = 91.5 bits (100), Expect = 4e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || |||||||| ||||| | || || ||| ||||| Sbjct 326418 CAAATTTTTGTTAAGACGCTTACTGGAAAAACCATCACTTTGGAAGTCGAACCGTCAGAT 326359 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || ||||| || ||||||||||| || ||||| |||||| Sbjct 326358 ACAATAGAGAATGTAAAAAGCAAAATTCAAGATAAAGAAGGAATTCCACCGGATCAGCAA 326299 Query 178044 CGACTTATCTTCGCCGGAAA 178063 || | || || || || || Sbjct 326298 CGTTTAATATTTGCTGGTAA 326279 Score = 89.7 bits (98), Expect = 1e-12 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || |||||||| || || | || |||||| || ||| Sbjct 325286 CAAATTTTTGTTAAGACCCTTACTGGAAAAACCATTACTTTGGAAGTGGAACCATCCGAC 325227 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||| || ||| || ||||| || ||||||||||| || || || |||||| Sbjct 325226 ACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAGCAA 325167 Query 178044 CGACTTATCTTCGCCGG 178060 || | || || ||||| Sbjct 325166 CGTTTGATATTTGCCGG 325150 Score = 87.8 bits (96), Expect = 4e-12 Identities = 109/149 (73%), Gaps = 3/149 (2%) Strand=Plus/Minus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || || |||||||||||||| || ||||| || || || || |||||| Sbjct 327394 AAAATGC---AGATATTTGTGAAAACTCTCACTGGGAAAACCATTACTCTGGAAGTGGAA 327338 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 |||||||| || || || || || || |||||||| || || ||||| || || Sbjct 327337 CCTTCAGACACAATTGAAAATGTGAAGGGTAAAATTCAGGATAAGGAGGGAATTCCACCC 327278 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAA 178063 || || || ||||| || || || || || Sbjct 327277 GATCAACAGCGACTCATTTTTGCTGGTAA 327249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203629502017236