Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= AC_000190.1 Length=33501 Score E Sequences producing significant alignments: (Bits) Value seq12 80.6 6e-11 >seq12 Length=399341 Score = 80.6 bits (88), Expect = 6e-11 Identities = 97/132 (73%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 31245 TACTCCAACGTTGCCTCGGTAGTCTCTATCTATGACTCCAGCGGCTATATCAAGACTGTG 31304 ||||||||| ||||| | ||| ||| ||||| || || ||| | || || | | ||| Sbjct 231171 TACTCCAACATTGCCCCTGTAATCTGCATCTACAACGCCCGCGCCGATGTCGATGCCGTG 231112 Query 31305 ATGCAAAGCTAGGCCAGATCGTGGAGCAATTCTTCCATAGCAGCCCTCAGGAATAACAAG 31364 | |||||| | ||||||||| || ||||| | ||||||||||| |||||| | ||| Sbjct 231111 CTTCAAAGCCAAGCCAGATCGAGGTGCAATGCGACCATAGCAGCCGACAGGAACAGCAAT 231052 Query 31365 CTGTAAGTCTGT 31376 || | ||| || Sbjct 231051 TTGAATGTCAGT 231040 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107074032744106