Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq123 96.9 7e-15 >seq123 Length=120441 Score = 96.9 bits (106), Expect = 7e-15 Identities = 225/334 (67%), Gaps = 4/334 (1%) Strand=Plus/Minus Query 281742 GTGAAGATATACCTTGCACTCGCGTGGTCTTTACCACCCTGCAGCCTCGACCCAAACTGA 281801 || || || || |||||||| || ||| | || || | || | | ||||| ||| Sbjct 82583 GTAAAAATGTATCTTGCACTGGCCGCATCTCTGCCGCCGAGAAGTCGAGTGCCAAATTGA 82524 Query 281802 CCCTCCGGCAACAACCAGTTAATGTTATTGCTCCCGACGTAATCCTGAGCCAGGTTGACG 281861 || ||| | ||| ||| ||||||||||| || ||| ||| ||||||| || | Sbjct 82523 CCAATCGGTAGCAATATGTTGATGTTATTGCTGCCCACGAAATTATGAGCCAAATTTATA 82464 Query 281862 ATTGTCCCCTGAAGCGATACCTCACCGTGGTGATAGGCGCTGTGTTCGGCAACATAACCA 281921 || || | | || || || ||||||||||| || ||||| ||||| ||||| Sbjct 82463 ATGGTGCTCATCAGACTGACTTCGCCGTGGTGATAAGCTGAATGTTCAGCAACGGAACCA 82404 Query 281922 CTGAACTGTGCTACCTTCACGTCTGATGTCAAGTTGCGTTTGAAA-GCGCAATATAATAC 281980 | ||| || || ||||| ||| | | |||||| |||||| || | | || || Sbjct 82403 GCAAGCTGAGCGACTTTCACTTCTCGTTTATCGTTGCGCTTGAAACACGTGA-ACAAAAC 82345 Query 281981 TTTTCGTTGAGAAGGCTTGAAACCATCAACGACAGACGGAATGCTGCGTTCCAGGT-CAT 282039 ||| ||||| |||||| || |||||||| | || |||||||| || || | ||| Sbjct 82344 TTTACGTTGTCCAGGCTTCAAGCCATCAACTATCGAAGGAATGCTACGCTCGTTATCCAT 82285 Query 282040 ACCGCGAGAACAAAATAAGTTCCTTGTCAATGAA 282073 || ||||||||| | || ||||| ||||| Sbjct 82284 GTTGC-TGAACAAAATCAACTCTTTGTCGATGAA 82252 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057743343895130