Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq146 120 4e-22 >seq146 Length=107015 Score = 120 bits (132), Expect = 4e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 52799 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 52858 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 12392 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 12333 Query 52859 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGA 52918 ||||| ||||| |||| ||||| |||||||| ||| | ||| | |||| |||| Sbjct 12332 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 12273 Query 52919 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 52978 || ||||| || ||||||| || || ||| || ||||| |||||||| || || ||| Sbjct 12272 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 12213 Query 52979 ATTTTTATGATCGTCTTTTGTGGAATTTCCCAAA 53012 || | ||||| ||||| | ||||||||||| Sbjct 12212 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 12179 Score = 116 bits (128), Expect = 4e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 53942 TACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACAC 54001 || ||| ||||||||| || ||||| | || |||||||||||||||||| || ||| Sbjct 10901 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 10842 Query 54002 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 54060 |||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| || Sbjct 10841 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 10783 Query 54061 AGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 54120 || ||| | ||||| || || | ||| ||| ||||| |||||||| || || Sbjct 10782 GGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAG 10723 Query 54121 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 54156 || | | || || | ||||| |||||||| || Sbjct 10722 AAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 10687 Score = 111 bits (122), Expect = 2e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 54704 GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTAAATAAATCCTTCATC 54763 ||||| ||||| |||||||| | || ||||||| | | ||||||| | ||| Sbjct 9796 GAAATCATCGGCGAATGTTTGTTCGTGTTGGGATTGATCCACTGGTATAAATCATCAATC 9737 Query 54764 ACTTCACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCT 54823 || || || || | |||||| ||||||||||| | ||| |||||||| | ||||| Sbjct 9736 ACATCGCTGAAAACTTTTTTCGTTTCTTTGTGCAAATTGCTGACGGCTATGCGTGCGGCC 9677 Query 54824 AGAATGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTG 54883 | | ||||| |||||||||| |||||| ||||| | ||||| || | || | || Sbjct 9676 AATGTCGCATAGTCCGGATGTTTTGTAGTCATTGTGGCGGAAATTTCAGCGGCCAAATTG 9617 Query 54884 TCCAATTCTACCGTTGTTACTCCATTATA 54912 |||||||| || ||||| || || | ||| Sbjct 9616 TCCAATTCGACAGTTGTCACACCTTGATA 9588 Score = 100 bits (110), Expect = 3e-16 Identities = 174/248 (70%), Gaps = 9/248 (4%) Strand=Plus/Minus Query 53356 TTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCGTATGGTCCTTCCTTCTC 53415 ||| |||||||| ||||| || || ||| ||| || |||||||| || || | Sbjct 11691 TTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTGTTT 11632 Query 53416 AGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATT 53475 || | || ||||| ||||| ||| | ||||| |||||||| || || |||||||| Sbjct 11631 TGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTTATT 11572 Query 53476 TAG--ATCTTG-TGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 53532 | |||| | | |||| || | ||||| ||||| | | |||||| || || || Sbjct 11571 CAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATCCGC 11515 Query 53533 TAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGG 53592 |||||||| ||||||||||| || |||| ||| | || ||||| |||| || | | Sbjct 11514 CAATCCTTGTACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT---G 11458 Query 53593 AATAGGAT 53600 || ||||| Sbjct 11457 AAAAGGAT 11450 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||||||||||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 11970 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 11911 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 || ||||| || ||||||||||| || || |||||||||||||| || |||| ||| || Sbjct 11910 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 11851 Query 53269 ACTATTTCTAAGACCGTA 53286 |||||| ||||| || Sbjct 11850 CGAATTTCTCAGACCATA 11833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593677434534480