Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_001993.1
Length=236120
Score E
Sequences producing significant alignments: (Bits) Value
seq1863 111 2e-19
seq332 111 2e-19
seq2524 105 1e-17
seq326 105 1e-17
seq117 91.5 2e-13
seq5215 86.0 9e-12
>seq1863
Length=625
Score = 111 bits (122), Expect = 2e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| || || |||||||| || || |||| | ||| ||
Sbjct 289 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 348
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| ||||| |||||||||||||||||||| || ||||| |||||
Sbjct 349 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 408
Query 124658 ACAAAGGCTTATTTTTGCAGG 124678
||| | || |||||||| ||
Sbjct 409 GCAACGTCTGATTTTTGCTGG 429
Score = 102 bits (112), Expect = 1e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| || || |||||||| || || | || | || ||
Sbjct 6 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAGCCATC 65
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| ||||| |||||||||||||||||||| || ||||| |||||
Sbjct 66 TGATACAATAGAAAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 125
Query 124658 ACAAAGGCTTATTTTTGCAGG 124678
||| | || |||||||| ||
Sbjct 126 GCAACGTCTGATTTTTGCTGG 146
>seq332
Length=28044
Score = 111 bits (122), Expect = 2e-19
Identities = 109/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| || || |||||||| || || |||| | ||| ||
Sbjct 337 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATC 278
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| ||||| |||||||||||||||||||| || ||||| |||||
Sbjct 277 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 218
Query 124658 ACAAAGGCTTATTTTTGCAGG 124678
||| | || |||||||| ||
Sbjct 217 GCAACGTCTGATTTTTGCTGG 197
Score = 105 bits (116), Expect = 1e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| || || |||||||| || || | || | ||| ||
Sbjct 620 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 561
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| ||||| |||||||||||||||||||| || ||||| |||||
Sbjct 560 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 501
Query 124658 ACAAAGGCTTATTTTTGCAGG 124678
||| | || |||||||| ||
Sbjct 500 GCAACGTCTGATTTTTGCTGG 480
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| |||||| | || || | ||||| ||||| || || | || |||| |
Sbjct 1253 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 1194
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||||||| ||| ||||| || |||||||| |||||||| || ||||| ||||||
Sbjct 1193 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 1134
Query 124659 CAAAGGCTTATTTTTGCAGG 124678
|| ||||||||||||| ||
Sbjct 1133 CAGCGGCTTATTTTTGCTGG 1114
Score = 86.0 bits (94), Expect = 9e-12
Identities = 109/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| || || || ||||| || || | || | ||| ||
Sbjct 27918 AATGCAAATTTTTGTTAAGACTCTTACTGGGAAAACCATCACGTTGGAAGTAGAACCATC 27859
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| | ||| ||||| ||||||||||| || || || || |||||
Sbjct 27858 TGATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCA 27799
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATT 124687
|||| | | |||||||| || || || ||
Sbjct 27798 ACAACGTTTGATTTTTGCTGGTAAGCAGTT 27769
>seq2524
Length=468
Score = 105 bits (116), Expect = 1e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| || || |||||||| || || | || | ||| ||
Sbjct 373 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 314
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| ||||| |||||||||||||||||||| || ||||| |||||
Sbjct 313 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 254
Query 124658 ACAAAGGCTTATTTTTGCAGG 124678
||| | || |||||||| ||
Sbjct 253 GCAACGTCTGATTTTTGCTGG 233
>seq326
Length=30629
Score = 105 bits (116), Expect = 1e-17
Identities = 108/141 (77%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| || || |||||||| || || | || | ||| ||
Sbjct 18663 AATGCAAATTTTTGTTAAGACTCTCACCGGCAAAACCATCACATTGGAAGTAGAACCATC 18604
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| ||||| |||||||||||||||||||| || ||||| |||||
Sbjct 18603 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 18544
Query 124658 ACAAAGGCTTATTTTTGCAGG 124678
||| | || |||||||| ||
Sbjct 18543 GCAACGTCTGATTTTTGCTGG 18523
Score = 102 bits (112), Expect = 1e-16
Identities = 107/141 (76%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| || | ||||| || || |||||||| || || | || | ||| ||
Sbjct 17818 AATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATC 17759
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| ||||| |||||||||||||||||||| || ||||| |||||
Sbjct 17758 TGATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCA 17699
Query 124658 ACAAAGGCTTATTTTTGCAGG 124678
||| | || |||||||| ||
Sbjct 17698 GCAACGTCTGATTTTTGCTGG 17678
Score = 91.5 bits (100), Expect = 2e-13
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| |||||| | || || | ||||| ||||| || || | || |||| |
Sbjct 19576 ATGCAGATATTTGTGAAAACGTTGACAGGAAAAACGATTACACTTGAAGTTGAGCCGTCA 19517
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
||||||||| ||| ||||| || |||||||| |||||||| || ||||| ||||||
Sbjct 19516 GATACAATTGAAAATGTAAAAAGCAAGATTCAAGACAAAGAAGGCATCCCACCAGATCAA 19457
Query 124659 CAAAGGCTTATTTTTGCAGG 124678
|| ||||||||||||| ||
Sbjct 19456 CAGCGGCTTATTTTTGCTGG 19437
>seq117
Length=123509
Score = 91.5 bits (100), Expect = 2e-13
Identities = 106/143 (74%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598
||||| ||||| | |||||||| || || ||||||||||| |||| ||||| ||
Sbjct 10411 ATGCAGATATTCGTGAAGACACTTACTGGAAAAACTATAACACTAGAAGTTGAACCATCA 10352
Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658
|| || || ||| | ||| |||||||| ||||| ||||| || || ||||||||
Sbjct 10351 GACACCATCGAAAATGTTAAAAGTAAAATTCAGGATAAGGAAGGCATTCCTCCTGATCAG 10292
Query 124659 CAAAGGCTTATTTTTGCAGGAAA 124681
||||| | || |||||||| ||
Sbjct 10291 CAAAGATTAATCTTTGCAGGTAA 10269
Score = 84.2 bits (92), Expect = 3e-11
Identities = 103/141 (73%), Gaps = 0/141 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || ||| | || ||| |||| || ||||| || || | || | || ||
Sbjct 8870 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 8811
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||| ||| ||| ||||| |||||||||||||| ||||| || |||||||||||
Sbjct 8810 TGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 8751
Query 124658 ACAAAGGCTTATTTTTGCAGG 124678
||| | | || ||||| ||
Sbjct 8750 GCAACGATTGATATTTGCTGG 8730
Score = 84.2 bits (92), Expect = 3e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
|||||| || ||| | || ||| |||| || ||||| || || | || | || ||
Sbjct 9157 AATGCAGATTTTTGTGAAAACATTAACTGGAAAAACAATCACATTGGAAGTAGAGCCATC 9098
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
|||||| ||| ||| ||||| |||||||||||||| ||||| || |||||||||||
Sbjct 9097 TGATACGATTGAAAATGTAAAAAGTAAAATTCAAGATAAGGAAGGCATTCCACCTGATCA 9038
Query 124658 ACAAAGGCTTATTTTTGCAGGAAA 124681
||| | | || ||||| || ||
Sbjct 9037 GCAACGATTGATATTTGCTGGTAA 9014
>seq5215
Length=241
Score = 86.0 bits (94), Expect = 9e-12
Identities = 109/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597
||||||||| ||| | ||||| || || |||||||| || || | || | || ||
Sbjct 236 AATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAGCCATC 177
Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657
||||||||| ||| | ||| ||||| ||||||||||| || || || || |||||
Sbjct 176 TGATACAATAGAAAATGTGAAAGGAAAAATACAAGATAAAGAGGGAATTCCTCCGGATCA 117
Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATT 124687
|||| | | |||||||| || || ||||
Sbjct 116 ACAACGTTTGATTTTTGCTGGTAAGTAATT 87
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 755399803516800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |