Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq140 86.0 1e-11 >seq140 Length=110867 Score = 86.0 bits (94), Expect = 1e-11 Identities = 201/300 (67%), Gaps = 5/300 (2%) Strand=Plus/Plus Query 135637 GATCCTGTTTTGCATATAGAACTTAGGAGATGGGCGGATGTTTTTATTATAGCGCC-CTT 135695 ||||||||| | || ||||||| || ||||||| || |||| | || || || || Sbjct 81022 GATCCTGTTCTTCACGTAGAACTAAGACGATGGGCAGACATTTTGGTGATTGCACCACTG 81081 Query 135696 AACGGCAAATACGTTAGCAAAAATAGCTAATGGTATATGCGATAATTTACTGACGTCTAT 135755 ||| ||||| || | || ||||| ||||| || || |||||||| | || | | Sbjct 81082 GACG-CAAATTCGATGGCGAAAATTTGCAATGGAATTTGTGATAATTTGTTAACAAGTTT 81140 Query 135756 TGTAAGAGCCTGGGATACAAACAAACCACTCATTTTCTGTCCTGCAATGAATACTCTTAT 135815 || |||| |||||| || || || | | ||||| ||||||||||| || Sbjct 81141 GGTTCGAGCATGGGATGGTGCAAAGCCGGTCTATATATGTCCCGCAATGAATACCTACAT 81200 Query 135816 GTGGGAACATCCTATTACAGAAAAACATATAGATACGTTAAAATAT---ATGGGTTTCAT 135872 ||||||||| || | || | ||||| || || | | | ||| || | || |||| Sbjct 81201 GTGGGAACACCCGTTAACGTATAAACAGATGGACAAGCTGAAAAATTTCTTTGGATTCAA 81260 Query 135873 AGAAATAGAATGCATAGaaaaaaaaCTAGCATGTGGAGACGTAGGAAATGGTGCTATGGC 135932 |||| | ||||| || ||| || || || || ||| || ||||||||||||| Sbjct 81261 AGAAGTTCCTTGCATCGAGAAAGAATTAATGTGCGGTGACCGTGGTTATGGTGCTATGGC 81320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923128125698040