Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq1 111 2e-19
seq227 105 8e-18
seq28 105 8e-18
seq9 105 8e-18
>seq1
Length=887815
Score = 111 bits (122), Expect = 2e-19
Identities = 75/84 (89%), Gaps = 0/84 (0%)
Strand=Plus/Minus
Query 60055 TGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114
|| |||| |||||| |||| ||||||||||||| |||| |||||||||||||||| ||
Sbjct 301462 TGGAAAAACTTCTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAAT 301403
Query 60115 ACTCACCACTATACTACCGAGGAT 60138
||||||||||||||||||||||||
Sbjct 301402 ACTCACCACTATACTACCGAGGAT 301379
>seq227
Length=71895
Score = 105 bits (116), Expect = 8e-18
Identities = 79/93 (85%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 60045 TTAACGTTTATGAAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGAC 60104
|||| | ||| || ||| |||| |||| ||||||||||||| |||| ||||||||||
Sbjct 53729 TTAAATTATATAAATAATCAACTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGAC 53788
Query 60105 AGGCGGACATACTCACCACTATACTACCGAGGA 60137
|||||| |||||||||||||||||||||||||
Sbjct 53789 AGGCGGGAATACTCACCACTATACTACCGAGGA 53821
>seq28
Length=299044
Score = 105 bits (116), Expect = 8e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 71483 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 71424
Query 60126 TACTACCGAGGATTGA 60141
|||||||||||| |||
Sbjct 71423 TACTACCGAGGACTGA 71408
>seq9
Length=435887
Score = 105 bits (116), Expect = 8e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 188281 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 188340
Query 60126 TACTACCGAGGAT 60138
|||||||||||||
Sbjct 188341 TACTACCGAGGAT 188353
Score = 105 bits (116), Expect = 8e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| |||| ||||||||||||| |||| |||||||||||||||| |||||||||||||
Sbjct 188978 CTCCCCGGCCGGGAATCGAACCCGGGTCGCCCGCGTGACAGGCGGGAATACTCACCACTA 189037
Query 60126 TACTACCGAGGAT 60138
|||||||||||||
Sbjct 189038 TACTACCGAGGAT 189050
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571775063918280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |