Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq263 143 2e-29 seq332 95.1 1e-14 seq146 86.0 6e-12 seq326 82.4 7e-11 >seq263 Length=55217 Score = 143 bits (158), Expect = 2e-29 Identities = 259/371 (70%), Gaps = 12/371 (3%) Strand=Plus/Plus Query 57737 GGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCA 57796 ||| || ||||||| |||||| | ||||| || ||||| | | || || || || || Sbjct 23431 GGTGGAGCGATTTTCGCAAGAAATTCAAGTAACCGAGGCACGTTTTTTCTATGGCTTCCA 23490 Query 57797 AGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAA 57856 | | ||||| ||||| || ||||| |||||||| || | ||||| || ||| | Sbjct 23491 AATTGCCATAGAAAATGTCCATTCCGAAATGTACAGCCTCTTGATCGACACCTACATCCG 23550 Query 57857 GGACAACGACGAGAAACGTAGA----CTGTTCAACGCGATCGAAACAATGCCC-GCGATC 57911 || | ||| ||| || ||||||||||||||||| || || || ||| | Sbjct 23551 TGATCCGGTGGAG---CGT-GATTTTCTGTTCAACGCGATCGAGACCATTCCGTGCG-TG 23605 Query 57912 GCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAA-AGCGCCACGGCCACGTTCGCCGA 57970 || || ||||| ||| | | ||||| | || || | | | || ||| Sbjct 23606 AAGAAAAAAGCAGACTGGGCTTTGCGCTGGATCGGTGACCGTCA-GTCGCCATTTTGCGA 23664 Query 57971 GAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAAT 58030 | | |||||||||| || || ||||| || |||||||| |||||||| ||| |||| Sbjct 23665 ACGTTTGGTCGCGTTCGCAGCTGTTGAAGGCATTTTCTTTTCCGGCAGCTTCGCGTCAAT 23724 Query 58031 ATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATC 58090 || ||| |||| || ||||||||||||||||| ||||||| ||||||||| |||| || Sbjct 23725 TTTCTGGTTGAAAAAGCGCGGCCTGATGCCCGGTTTGACGTTCAGCAACGAGCTGATCTC 23784 Query 58091 GCGCGACGAGG 58101 || ||||||| Sbjct 23785 TCGTGACGAGG 23795 >seq332 Length=28044 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| || ||||||||||||||| | || || ||||| || Sbjct 27079 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 27020 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| | |||| ||| |||||||| | || || || ||| Sbjct 27019 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAGGAAGGAATTCCACCAGATCAG 26960 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||||| || || ||||| Sbjct 26959 CAACGTCTGATTTTTGCTGG 26940 Score = 93.3 bits (102), Expect = 4e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || ||||||||||||||| | || || ||||| || Sbjct 27638 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 27579 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| || |||| ||| |||||||| | || || || || Sbjct 27578 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 27519 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTT 31341 || ||| | || || ||||| || ||||| Sbjct 27518 CAACGTTTGATTTTTGCTGGTAAGCAGTT 27490 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || ||||||||||||||| | || || ||||| || Sbjct 26796 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 26737 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| || |||| ||| |||||||| | || || || ||| Sbjct 26736 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAG 26677 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 || ||| | || || ||||| || Sbjct 26676 CAACGTTTGATTTTTGCTGGTAA 26654 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||||| || ||||||||||||||| | || || ||||| || Sbjct 27359 ATGCAAATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 27300 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| || |||| ||| |||||||| | || || || || Sbjct 27299 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 27240 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 |||||| | || || ||||| || Sbjct 27239 CAGCGTTTGATTTTTGCTGGTAA 27217 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| || ||||||||||||||| | || || ||||| || Sbjct 26514 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTAGAAGTAGAACCATCT 26455 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| | |||| ||| || || || | || || || ||| Sbjct 26454 GATACAATAGAGAATGTAAAAGGCAAAATACAGGATAAAGAGGGAATTCCACCAGATCAG 26395 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||| | || || ||||| Sbjct 26394 CAACGTTTGATTTTTGCTGG 26375 >seq146 Length=107015 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 ||||| ||| |||| || ||||| |||||||| || || || |||| || ||||| || Sbjct 10818 TTCAATGCGCTTCATGAATAGATCAGGTATCCAGAGGGCATAAAACAAATCTCGGGCTCG 10759 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 || || ||| |||||||||||| || | ||| || || | ||| || ||||| Sbjct 10758 GTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAGAAAATCAAATATGTCTGCGTGCCA 10699 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCT 23495 || || | || || |||||||| || ||||||| Sbjct 10698 AGGTTCCAAATAGACCGCAAACGCCCCAGGTCTCT 10664 Score = 82.4 bits (90), Expect = 7e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659 ||||||| | || || | ||||||||||| ||| | ||||||||| ||||| ||| Sbjct 10439 GCTCGAATGCAATGGACATTCAAACCTATGCCACCGGCACTTTTCGATATAATCGCACAT 10380 Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTC 23694 | ||||| |||||||| ||||| ||||||||||| Sbjct 10379 TCTTTCAATGTGTCGTATATGCCTTCGATGCTGTC 10345 >seq326 Length=30629 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| |||||||| || ||||||||||||||| | || || ||||| || Sbjct 17817 ATGCAAATTTTCGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 17758 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| | ||| || || ||||| | || || || ||| Sbjct 17757 GATACAATAGAGAATGTAAAAGGCAAAATTCAAGATAAAGAAGGAATTCCACCAGATCAG 17698 Query 31313 CAGCGTCTAATATTCGCTGG 31332 || ||||| || || ||||| Sbjct 17697 CAACGTCTGATTTTTGCTGG 17678 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || |||||||| || ||||||||||||||| | || || ||||| || Sbjct 18379 ATGCAGATTTTTGTTAAGACTCTTACCGGCAAAACGATCACCTTGGAAGTAGAACCATCT 18320 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | || ||| || |||| ||| |||||||| | || || || || Sbjct 18319 GATACAATAGAGAATGTAAAAGGGAAAATACAGGATAAGGAAGGAATTCCACCGGATCAA 18260 Query 31313 CAGCGTCTAATATTCGCTGGCAA 31335 || ||| | || || ||||| || Sbjct 18259 CAACGTTTGATTTTTGCTGGTAA 18237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445733240551920