Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24]
5,951 sequences; 50,853,738 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq37 84.2 4e-11
>seq37
Length=276709
Score = 84.2 bits (92), Expect = 4e-11
Identities = 133/191 (70%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 35249 TTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAA 35308
|| ||||||||||| || |||||| | ||||||||||| || | || | || |||
Sbjct 92083 TTTTGGAGAGGAGTGGTCGAAGAATTGCTTTGGTTCATCAGTGGAAGCACCAATGCTAAA 92024
Query 35309 GAATTGGCCAAGAAGAAGATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGAC 35368
| | | ||||||| | |||| ||| | | ||| || | ||||| | |||
Sbjct 92023 CAGCTTTCAGAGAAGAATGTTAACATTTGGGATGGAAATTCTTCCAGAGAATTCCTAGAC 91964
Query 35369 AGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGG 35428
|||||||| | ||| || | ||| || |||||||| || || || || |||||||||
Sbjct 91963 AGTAGAGGACTGTACAATTATGAAGAAGGTGATTTGGGGCCTGTTTATGGTTTCCAATGG 91904
Query 35429 CGTCATTTTGG 35439
|| || |||||
Sbjct 91903 CGCCACTTTGG 91893
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989508547003205
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |