Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichinella_20sp._20T6_20[genbank_20GCA_5F001447435.1_202015-11-24] 5,951 sequences; 50,853,738 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq146 116 5e-21 seq263 82.4 1e-10 >seq146 Length=107015 Score = 116 bits (128), Expect = 5e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 62037 TTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCC 62096 ||||||| ||||||||||| | | ||| || || || | | ||||||||| || Sbjct 12392 TTGTCCACGGTGAATTGAATAGCCGTCACTGCCGGCTTGGTTCTCAAATAGTACATCCCA 12333 Query 62097 GTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGA 62156 ||||| ||||| |||| ||||| |||||||| || | ||| | |||| |||| Sbjct 12332 GTTTTCAGACCCTTCTTCCAGCCGTAGAAATGCATTGATGTCAATTTAGCATAATTCGGC 12273 Query 62157 TCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCC 62216 || ||||| || ||||||| || || ||| || ||||| |||||||| || || ||| Sbjct 12272 TCGGCTATGTGAATATTCAACGACTGGGATTGGTCAATGAATGCTCCCCTTTCAGCGGCC 12213 Query 62217 ATTTTTATGATCGTCTTTTGTGCAATTTCCCAAA 62250 || | ||||| ||||| | ||||||||||| Sbjct 12212 ATGTCTATGACGCATTTTTGGGAAATTTCCCAAA 12179 Score = 105 bits (116), Expect = 8e-18 Identities = 177/251 (71%), Gaps = 9/251 (4%) Strand=Plus/Minus Query 62591 ATATTGTAGAATACCGTTACTGGCGTACGATCCTACATATGTATCATATGGTCCTTCCTT 62650 |||||| |||||||| ||||| || || ||| ||| || || ||||| || || Sbjct 11694 ATATTGAAGAATACCCTTACTAGCTGGTGAGCCTTGATAAGTCTCGTATGGACCAAACTG 11635 Query 62651 CTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTT 62710 | || | | ||||| ||||| ||| | ||||| ||||||||||| || ||||| Sbjct 11634 TTTTGCCAAATCGCAACTGCTTTCTAACGCAGCATAATAGATGGTTTCAAAAATTTTCTT 11575 Query 62711 ATTTAG--ATCTTG-TGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTC 62767 ||| | |||| | | |||| || | ||||| ||||| | | |||||| || || Sbjct 11574 ATTCAACAATCTAGCTTCTTC--GGAT-TCAAACGGATATCGCATCAAAATAAAAGCATC 11518 Query 62768 CGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTC 62827 ||| |||||||| ||||||||||| || |||| ||| | || ||||| |||| || | Sbjct 11517 CGCCAATCCTTGTACACCAATACCAATTGGTCGATGACGTTTGTTAGACTTTTCTGCCT- 11459 Query 62828 TGGAATAGGAT 62838 ||| ||||| Sbjct 11458 --GAAAAGGAT 11450 Score = 104 bits (114), Expect = 3e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 63180 TACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACAC 63239 || ||| ||| ||||| || ||||| | || |||||| ||||||||||| || ||| Sbjct 10901 TATAATTTTTCAAACTCATCGCCCCACAAATCCGCCAATCCAGGACATTCATGAGGGCAC 10842 Query 63240 ATCAACGACCACTCTCCGTCATCCTTCACT-CGTTTCATAAAGAGATCAGGAATCCAAAG 63298 |||| ||||| |||||||| ||||| | || ||||| || |||||||| ||||| || Sbjct 10841 ATCAGTGACCAATCTCCGTC-GGCTTCAATGCGCTTCATGAATAGATCAGGTATCCAGAG 10783 Query 63299 AGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAG 63358 || ||| | ||||| | || | ||| ||| ||||| |||||||| || || Sbjct 10782 GGCATAAAACAAATCTCGGGCTCGGTTTTCTTCGACGCCTGTGTTCTTTTTCGCGTCAAG 10723 Query 63359 GAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 63394 || | | || || | ||||| |||||||| || Sbjct 10722 AAAATCAAATATGTCTGCGTGCCAAGGTTCCAAATA 10687 Score = 96.9 bits (106), Expect = 4e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 |||||| |||||||| || | || | ||||| || | ||| || |||| ||| || Sbjct 11970 TACTTGAAATTCTCCCGATAGCACACGACGAGTATAGACATTCGACGTGTACGCTTCTAC 11911 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 || ||||| || ||||||||||| || || |||||||||||||| || |||| ||| || Sbjct 11910 TGATTCATTGTTGCCCAAAATTTGCGCTGTCGATGCAGTCGGCATTGGAGCCAACAACAA 11851 Query 62507 ACTATTTCTAAGACCGTA 62524 |||||| ||||| || Sbjct 11850 CGAATTTCTCAGACCATA 11833 >seq263 Length=55217 Score = 82.4 bits (90), Expect = 1e-10 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 33278 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTC 33337 ||| |||||| ||| |||||||| || || |||||||||||||| || ||||| ||||| Sbjct 24288 CATCACTCCCGCTTTCTGGTATTCGCCGACGCGTTTTTCGAAAAAGTTCGTTTTACCTTC 24229 Query 33338 CAATGATATATTTTCCATGAAATCAAACGGATT 33370 || || || |||||| || || |||||||| Sbjct 24228 CAGCGAAATCAATTCCATAAAGTCGAACGGATT 24196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629770749443280